C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222725 LFNG-001 ENSG00000106003 9606 + 7:2519842-2528429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222725
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222725 1.177±0.00 1.681±0.00 2.571±2.07 1.908±0.00 1.702±0.00 1.564±0.00 1.102±0.45 3.337±2.85 0.518±0.00 4.329±3.38 2.983±1.69 0.615±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RS CIL_0007RS_0001 VISTA 7:2311652-2915186
CIL_00027L CIL_00027L_0002 CGP 7:2474844-2529177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001541 IEA ovarian follicle development
GO:0001756 IEA somitogenesis
GO:0003674 ND molecular_function
GO:0005576 NAS extracellular region
GO:0007143 IEA female meiotic division
GO:0007219 TAS Notch signaling pathway
GO:0007386 IEA compartment pattern specification
GO:0007389 IEA pattern specification process
GO:0008152 IEA metabolic process
GO:0008593 ISS regulation of Notch signaling pathway
GO:0009887 NAS organ morphogenesis
GO:0014807 IMP regulation of somitogenesis
GO:0016020 IEA membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030173 IEA integral component of Golgi membrane
GO:0031982 IDA vesicle
GO:0032092 IEA positive regulation of protein binding
GO:0033829 ISS:IEA O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031555 Lfng-201 protein_coding Mus_musculus 0 1264

Loading