C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324306 ZKSCAN1-001 ENSG00000106261 9606 + 7:100015581-100041689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324306
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324306 3.465±0.00 1.849±0.00 3.432±0.00 6.103±2.88 2.949±0.25 2.880±1.11 2.033±0.62 10.561±0.00 2.128±0.46 3.599±0.16 1.022±0.00 7.612±4.07 1.367±0.65 8.164±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002F6 CIL_0002F6_0001 CGP 7:100015572-100065038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA:NAS sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA:NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:NAS regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019660 Zkscan1-001 protein_coding Mus_musculus 0 1932
ENSMUST00000066617 Zkscan1-201 protein_coding Mus_musculus 0 939
ENSMUST00000110962 Zkscan1-003 protein_coding Mus_musculus 0 939
ENSMUST00000110963 Zkscan1-002 protein_coding Mus_musculus 0 939
ENSMUST00000060762 Zfp397-201 protein_coding Mus_musculus 4e-36 159
ENSMUST00000165640 Zfp113-201 protein_coding Mus_musculus 4e-21 110
ENSMUST00000049393 Zfp113-001 protein_coding Mus_musculus 4e-21 110
ENSMUST00000086686 Zfp605-201 protein_coding Mus_musculus 0.0000000001 75
ENSMUST00000112528 Zfp605-001 protein_coding Mus_musculus 0.0000000001 75
ENSMUST00000110216 Zfp930-201 protein_coding Mus_musculus 0.0000000001 75
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000002 68
ENSMUST00000125797 Atp13a2-003 retained_intron Mus_musculus 0.000001 62

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