C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426572 ZKSCAN1-003 ENSG00000106261 9606 + 7:100015599-100034271 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverOvaryENST00000426572
Transcript ID Bladder Brain Breast Colon Heart Liver Ovary
ENST00000426572 3.506±0.00 3.802±0.00 3.938±0.00 5.981±0.00 2.528±0.00 4.400±0.00 10.804±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002F6 CIL_0002F6_0001 CGP 7:100015572-100065038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019660 Zkscan1-001 protein_coding Mus_musculus 0 1744
ENSMUST00000066617 Zkscan1-201 protein_coding Mus_musculus 0 939
ENSMUST00000110962 Zkscan1-003 protein_coding Mus_musculus 0 939
ENSMUST00000110963 Zkscan1-002 protein_coding Mus_musculus 0 939
ENSMUST00000060762 Zfp397-201 protein_coding Mus_musculus 7e-37 159
ENSMUST00000165640 Zfp113-201 protein_coding Mus_musculus 8e-22 110
ENSMUST00000049393 Zfp113-001 protein_coding Mus_musculus 8e-22 110
ENSMUST00000086686 Zfp605-201 protein_coding Mus_musculus 0.00000000003 75
ENSMUST00000112528 Zfp605-001 protein_coding Mus_musculus 0.00000000003 75
ENSMUST00000110216 Zfp930-201 protein_coding Mus_musculus 0.00000000003 75

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