C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106346 USP42 9606 + 7:6104884-6161564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306177 USP42-005 6104884-6161564 protein_coding
  ENST00000404008 USP42-004 6104950-6145575 nonsense_mediated_decay
  ENST00000426246 USP42-006 6116480-6155147 protein_coding
  ENST00000451154 USP42-003 6104977-6115381 nonsense_mediated_decay
  ENST00000465073 USP42-008 6104977-6149822 protein_coding
  ENST00000479544 USP42-007 6104975-6157331 retained_intron
  ENST00000521713 USP42-009 6105022-6160631 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306177ENST00000465073ENST00000479544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306177 1.468±0.00 1.952±0.00 0.124±0.00 0.920±0.76 0.373±0.18 1.011±0.00 0.617±0.54 1.136±0.77 0.666±0.13 1.519±0.59 0.222±0.00 2.672±1.10 1.181±0.18 5.911±0.68
ENST00000465073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.412±0.00 N/A N/A N/A
ENST00000479544 N/A N/A N/A 0.567±0.00 0.255±0.00 0.464±0.00 N/A 0.245±0.00 N/A N/A 0.119±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007283 IEA spermatogenesis
GO:0016579 ISS protein deubiquitination
GO:0030154 IEA cell differentiation
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077300 usp42 ubiquitin specific peptidase 42 protein_coding Danio_rerio
ENSMUSG00000051306 Usp42 ubiquitin specific peptidase 42 protein_coding Mus_musculus

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