C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051306 Usp42 10090 - 5:143710325-143732280 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053287 Usp42-001 143710325-143732280 protein_coding
  ENSMUST00000129606 Usp42-004 143721653-143722945 retained_intron
  ENSMUST00000141225 Usp42-005 143713753-143715613 processed_transcript
  ENSMUST00000141396 Usp42-003 143713768-143717187 retained_intron
  ENSMUST00000155408 Usp42-002 143716404-143728017 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053287ENSMUST00000141225ENSMUST00000141396ENSMUST00000155408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053287 2.215±0.89 1.370±0.48 1.644±0.76 4.583±2.69 1.697±0.61 1.675±0.32 0.751±0.13 1.645±0.14 1.168±0.30 2.256±0.37 1.445±0.09 2.583±1.14 2.716±1.55 7.042±3.51
ENSMUST00000141225 N/A 2.915±0.62 N/A 6.348±0.00 N/A N/A N/A N/A N/A N/A N/A 11.547±0.00 6.753±0.65 78.652±0.00
ENSMUST00000141396 0.818±0.32 2.030±0.36 0.604±0.00 0.896±0.23 0.903±0.17 2.296±0.50 0.257±0.02 0.483±0.06 0.595±0.19 1.516±0.05 N/A 2.778±0.55 N/A N/A
ENSMUST00000155408 N/A N/A N/A N/A 1.015±0.00 N/A 0.334±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RJ CIL_0006RJ_0002 CGP 5:143622447-143732280
CIL_0005BI CIL_0005BI_0002 CGP 5:143710325-143904256

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007283 TAS spermatogenesis
GO:0016579 IDA protein deubiquitination
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077300 usp42 ubiquitin specific peptidase 42 protein_coding Danio_rerio
ENSG00000106346 USP42 ubiquitin specific peptidase 42 protein_coding Homo_sapiens

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