C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium channel, subfamily T, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107147 KCNT1 9606 + 9:135702185-135793150 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263604 KCNT1-201 135736633-135793146 protein_coding
  ENST00000371757 KCNT1-002 135702192-135793103 protein_coding
  ENST00000460750 KCNT1-003 135702213-135793103 nonsense_mediated_decay
  ENST00000473941 KCNT1-010 135714458-135759839 protein_coding
  ENST00000475008 KCNT1-008 135788989-135793146 retained_intron
  ENST00000486577 KCNT1-007 135714554-135792161 protein_coding
  ENST00000487664 KCNT1-001 135702185-135793150 protein_coding
  ENST00000488444 KCNT1-005 135736625-135792164 protein_coding
  ENST00000490355 KCNT1-006 135736633-135792164 protein_coding
  ENST00000490363 KCNT1-009 135753751-135786399 retained_intron
  ENST00000491806 KCNT1-004 135736519-135792164 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000263604ENST00000371757ENST00000460750ENST00000475008ENST00000487664ENST00000490355ENST00000490363ENST00000491806
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000263604 N/A N/A 1.181±0.58 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371757 N/A N/A N/A 0.254±0.00 0.010±0.00 0.133±0.00 N/A 1.129±0.03 0.619±0.40 0.193±0.06 0.173±0.02
ENST00000460750 N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A N/A 0.223±0.00
ENST00000475008 N/A N/A 0.590±0.00 0.050±0.00 0.012±0.00 N/A 0.008±0.00 0.581±0.00 0.163±0.08 N/A 0.103±0.03
ENST00000487664 N/A N/A 3.813±0.00 N/A N/A 0.083±0.00 N/A N/A N/A 0.116±0.00 N/A
ENST00000490355 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A
ENST00000490363 0.058±0.00 0.117±0.00 N/A N/A 0.026±0.00 N/A N/A 0.823±0.00 1.141±0.00 0.060±0.00 N/A
ENST00000491806 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.214±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EW CIL_0001EW_0001 CGP 9:135693407-135793150
CIL_0001EV CIL_0001EV_0001 CGP 9:135702185-135907228

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005249 IBA voltage-gated potassium channel activity
GO:0006813 IEA potassium ion transport
GO:0008076 IBA voltage-gated potassium channel complex
GO:0015269 IBA:IEA calcium-activated potassium channel activity
GO:0016020 IEA membrane
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079098 KCNT1 (1 of 3) potassium channel, subfamily T, member 1 protein_coding Danio_rerio
ENSDARG00000079484 kcnt1 potassium channel, subfamily T, member 1 protein_coding Danio_rerio
ENSMUSG00000058740 Kcnt1 potassium channel, subfamily T, member 1 protein_coding Mus_musculus

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