C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium channel, subfamily T, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058740 Kcnt1 10090 + 2:25863795-25918273 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037580 Kcnt1-001 25877873-25918273 protein_coding
  ENSMUST00000114170 Kcnt1-002 25877857-25895175 protein_coding
  ENSMUST00000114172 Kcnt1-003 25877881-25918273 protein_coding
  ENSMUST00000114176 Kcnt1-004 25877875-25918273 protein_coding
  ENSMUST00000128502 Kcnt1-009 25900277-25903395 processed_transcript
  ENSMUST00000131529 Kcnt1-008 25890647-25894460 processed_transcript
  ENSMUST00000138568 Kcnt1-005 25894343-25916590 processed_transcript
  ENSMUST00000145544 Kcnt1-006 25908063-25916923 processed_transcript
  ENSMUST00000150788 Kcnt1-007 25863795-25888942 processed_transcript
  ENSMUST00000153001 Kcnt1-010 25903502-25909905 processed_transcript
  ENSMUST00000171268 Kcnt1-201 25863854-25916117 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037580ENSMUST00000114170ENSMUST00000114172ENSMUST00000114176ENSMUST00000128502ENSMUST00000131529ENSMUST00000138568ENSMUST00000145544ENSMUST00000150788ENSMUST00000153001ENSMUST00000171268
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037580 N/A N/A N/A 0.005±0.00 N/A N/A N/A 0.002±0.00 0.006±0.00 N/A N/A N/A N/A
ENSMUST00000114170 N/A N/A N/A 0.081±0.00 N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A
ENSMUST00000114172 N/A 0.205±0.00 N/A 0.006±0.00 0.054±0.00 N/A N/A 0.004±0.00 0.007±0.00 N/A N/A 0.054±0.00 N/A
ENSMUST00000114176 0.878±0.14 0.687±0.11 2.551±0.08 0.022±0.02 0.097±0.04 0.064±0.00 3.423±1.47 0.008±0.00 0.016±0.01 0.025±0.00 2.047±0.70 0.002±0.00 0.317±0.00
ENSMUST00000128502 N/A N/A N/A 0.176±0.00 N/A N/A N/A 0.083±0.00 0.099±0.00 0.176±0.00 N/A N/A 0.809±0.00
ENSMUST00000131529 N/A N/A N/A 0.121±0.01 N/A 0.226±0.00 N/A N/A 0.063±0.00 N/A N/A 0.062±0.04 N/A
ENSMUST00000138568 0.500±0.05 N/A 2.417±0.08 N/A 0.123±0.00 N/A N/A 0.010±0.00 N/A 0.042±0.01 N/A 0.036±0.00 0.437±0.00
ENSMUST00000145544 N/A N/A 7.747±6.30 0.016±0.00 0.181±0.07 N/A N/A 0.035±0.01 N/A 0.049±0.02 N/A 0.080±0.10 0.099±0.00
ENSMUST00000150788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.792±0.00 N/A N/A
ENSMUST00000153001 N/A N/A N/A 0.071±0.00 0.379±0.00 N/A N/A 0.075±0.02 0.061±0.02 0.045±0.01 N/A 0.258±0.20 N/A
ENSMUST00000171268 2.034±1.17 N/A 5.104±2.15 0.064±0.02 0.297±0.13 N/A 2.032±0.00 0.020±0.00 0.026±0.02 0.058±0.01 5.030±1.31 N/A 0.593±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001EW CIL_0001EW_0002 CGP 2:25842995-25918273
CIL_0001EV CIL_0001EV_0002 CGP 2:25863795-25983282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005249 IBA voltage-gated potassium channel activity
GO:0008076 IBA voltage-gated potassium channel complex
GO:0015269 IBA calcium-activated potassium channel activity
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079098 KCNT1 (1 of 3) potassium channel, subfamily T, member 1 protein_coding Danio_rerio
ENSDARG00000079484 kcnt1 potassium channel, subfamily T, member 1 protein_coding Danio_rerio
ENSG00000107147 KCNT1 potassium channel, subfamily T, member 1 protein_coding Homo_sapiens

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