C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: far upstream element (FUSE) binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107164 FUBP3 9606 + 9:130578965-130638352 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319725 FUBP3-002 130579606-130638352 protein_coding
  ENST00000465949 FUBP3-004 130581095-130613022 processed_transcript
  ENST00000467100 FUBP3-003 130578965-130582086 processed_transcript
  ENST00000472006 FUBP3-005 130634621-130637051 processed_transcript
  ENST00000487406 FUBP3-007 130620414-130632022 processed_transcript
  ENST00000492199 FUBP3-006 130635864-130637233 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319725ENST00000465949ENST00000467100ENST00000487406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319725 13.033±0.00 15.910±0.00 1.038±0.00 10.074±7.72 6.952±5.12 6.678±4.09 3.858±3.11 6.045±0.43 6.953±2.38 4.673±2.58 1.527±1.32 13.227±5.98 14.751±5.04 12.300±2.84
ENST00000465949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.157±0.00
ENST00000467100 N/A N/A 0.895±0.00 N/A N/A 1.763±0.00 N/A N/A N/A N/A N/A 2.103±0.00 N/A N/A
ENST00000487406 8.846±0.00 N/A N/A N/A N/A N/A N/A N/A 3.364±0.00 N/A 0.606±0.00 N/A N/A 8.194±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0008XQ CIL_0008XQ_0001 VISTA 9:130365168-130965841
CIL_0005UH CIL_0005UH_0001 CGP 9:130444929-130638352
CIL_0006I8 CIL_0006I8_0001 CGP 9:130578965-130682981

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0010628 IDA positive regulation of gene expression
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086896 CABZ01073334.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000026843 Fubp3 far upstream element (FUSE) binding protein 3 protein_coding Mus_musculus

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