C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: far upstream element (FUSE) binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319725 FUBP3-002 ENSG00000107164 9606 + 9:130579606-130638352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319725 13.033±0.00 15.910±0.00 1.038±0.00 10.074±7.72 6.952±5.12 6.678±4.09 3.858±3.11 6.045±0.43 6.953±2.38 4.673±2.58 1.527±1.32 13.227±5.98 14.751±5.04 12.300±2.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0001 VISTA 9:130178260-130779710
CIL_0008XQ CIL_0008XQ_0001 VISTA 9:130365168-130965841
CIL_0005UH CIL_0005UH_0001 CGP 9:130444929-130638352
CIL_0006I8 CIL_0006I8_0001 CGP 9:130578965-130682981

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0010628 IDA positive regulation of gene expression
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113482 Fubp3-001 protein_coding Mus_musculus 0 2248
ENSMUST00000055244 Fubp3-201 protein_coding Mus_musculus 0 2058
ENSMUST00000132534 Fubp3-002 protein_coding Mus_musculus 0 662
ENSMUST00000154050 Fubp3-004 processed_transcript Mus_musculus 0 638
ENSMUST00000150473 Fubp3-008 protein_coding Mus_musculus 0 516
ENSMUST00000137889 Fubp3-003 protein_coding Mus_musculus 0 436
ENSMUST00000137504 Fubp3-005 processed_transcript Mus_musculus 0 287
ENSMUST00000130578 Fubp3-009 processed_transcript Mus_musculus 0 220

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