C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107742 SPOCK2 9606 - 10:72059035-72089032 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317376 SPOCK2-201 72059035-72089032 protein_coding
  ENST00000373109 SPOCK2-004 72059035-72088773 protein_coding
  ENST00000412663 SPOCK2-202 72086226-72089032 protein_coding
  ENST00000460053 SPOCK2-006 72063003-72068865 processed_transcript
  ENST00000463279 SPOCK2-002 72062805-72069251 processed_transcript
  ENST00000469121 SPOCK2-001 72062864-72070151 processed_transcript
  ENST00000483699 SPOCK2-003 72088357-72089032 processed_transcript
  ENST00000495888 SPOCK2-005 72086681-72088521 processed_transcript
  ENST00000536168 SPOCK2-203 72062406-72088526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317376ENST00000373109ENST00000463279ENST00000483699ENST00000495888ENST00000536168
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317376 5.896±0.00 23.080±0.00 1.478±0.00 35.041±19.06 2.558±0.86 1.486±0.28 1.534±1.02 8.021±7.69 0.740±0.15 23.506±15.19 0.477±0.06 3.472±1.66 6.005±1.85 12.853±8.89
ENST00000373109 N/A N/A 2.118±0.00 N/A N/A N/A N/A 3.333±0.00 N/A N/A N/A N/A N/A N/A
ENST00000463279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.821±0.00 37.682±0.00
ENST00000483699 N/A N/A N/A N/A 13.637±0.00 N/A N/A N/A 6.794±0.00 N/A N/A N/A N/A N/A
ENST00000495888 N/A N/A N/A 36.258±0.00 N/A 2.417±0.00 1.395±0.00 N/A N/A 18.105±0.00 N/A 3.587±0.00 N/A N/A
ENST00000536168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.311±0.00 N/A N/A 5.342±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0001 VISTA 10:71953326-72556599

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IDA:IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005539 IEA glycosaminoglycan binding
GO:0005578 NAS:IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction
GO:0007416 NAS synapse assembly
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0019800 IEA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030198 NAS extracellular matrix organization
GO:0045595 NAS regulation of cell differentiation
GO:0050840 IEA extracellular matrix binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075393 spock2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein_coding Danio_rerio
ENSMUSG00000058297 Spock2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 protein_coding Mus_musculus

Loading