C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317376 SPOCK2-201 ENSG00000107742 9606 - 10:72059035-72089032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317376
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317376 5.896±0.00 23.080±0.00 1.478±0.00 35.041±19.06 2.558±0.86 1.486±0.28 1.534±1.02 8.021±7.69 0.740±0.15 23.506±15.19 0.477±0.06 3.472±1.66 6.005±1.85 12.853±8.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0001 VISTA 10:71953326-72556599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA:IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005578 NAS:IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction
GO:0007416 NAS synapse assembly
GO:0030198 NAS extracellular matrix organization
GO:0045595 NAS regulation of cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121820 Spock2-001 protein_coding Mus_musculus 0 1923
ENSMUST00000165024 Spock2-201 protein_coding Mus_musculus 0 1609
ENSMUST00000138976 Spock2-002 retained_intron Mus_musculus 0 1456
ENSDART00000132027 spock2-001 protein_coding Danio_rerio 0 466
ENSDART00000110061 spock2-201 protein_coding Danio_rerio 0 442

Loading