C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536168 SPOCK2-203 ENSG00000107742 9606 - 10:72062406-72088526 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleTestisENST00000536168
Transcript ID Muscle Testis
ENST00000536168 0.311±0.00 5.342±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0001 VISTA 10:71953326-72556599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121820 Spock2-001 protein_coding Mus_musculus 0 1829
ENSMUST00000165024 Spock2-201 protein_coding Mus_musculus 0 1605
ENSMUST00000138976 Spock2-002 retained_intron Mus_musculus 0 1360
ENSDART00000110061 spock2-201 protein_coding Danio_rerio 0 451
ENSDART00000132027 spock2-001 protein_coding Danio_rerio 0 442

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