C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058297 Spock2 10090 + 10:60106219-60135198 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000121820 Spock2-001 60106219-60135198 protein_coding
  ENSMUST00000138976 Spock2-002 60106219-60127338 retained_intron
  ENSMUST00000165024 Spock2-201 60106468-60133908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121820ENSMUST00000138976ENSMUST00000165024
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121820 12.362±9.99 9.648±0.56 8.165±0.92 64.880±28.58 2.361±0.55 2.472±0.48 3.344±0.47 0.793±0.22 0.112±0.04 69.270±2.18 1.042±0.29 25.124±7.25 0.622±0.76 21.608±9.34
ENSMUST00000138976 N/A 4.354±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.558±0.96 N/A N/A
ENSMUST00000165024 N/A 2.257±0.03 N/A 22.529±0.00 1.168±0.28 0.785±0.00 0.516±0.01 0.228±0.10 0.032±0.01 N/A N/A 8.321±1.88 0.094±0.03 6.360±1.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0002 VISTA 10:59667734-60271225

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 ISS calcium ion binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007165 IEA signal transduction
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0019800 IDA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030198 IDA extracellular matrix organization
GO:0050840 IDA extracellular matrix binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075393 spock2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein_coding Danio_rerio
ENSG00000107742 SPOCK2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein_coding Homo_sapiens

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