C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: La ribonucleoprotein domain family, member 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107929 LARP4B 9606 - 10:806914-931705 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316157 LARP4B-002 809542-885762 protein_coding
  ENST00000406525 LARP4B-003 863779-931624 protein_coding
  ENST00000412411 LARP4B-004 864241-903515 protein_coding
  ENST00000440895 LARP4B-008 814442-817846 protein_coding
  ENST00000448368 LARP4B-007 812506-825244 protein_coding
  ENST00000469487 LARP4B-001 814762-815715 processed_transcript
  ENST00000476529 LARP4B-005 863743-931500 nonsense_mediated_decay
  ENST00000481118 LARP4B-006 864154-931476 processed_transcript
  ENST00000608970 LARP4B-009 814442-817846 retained_intron
  ENST00000609318 LARP4B-010 811806-820930 retained_intron
  ENST00000612396 LARP4B-201 806914-931705 protein_coding
  ENST00000614908 LARP4B-011 806914-815010 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316157ENST00000448368ENST00000609318ENST00000612396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316157 8.239±0.00 9.135±0.00 1.276±0.00 3.754±1.92 5.715±2.40 3.601±0.61 4.654±3.56 4.916±2.72 2.569±0.37 5.989±2.24 5.781±3.76 11.594±6.66 6.391±2.06 12.241±0.20
ENST00000448368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.600±0.00
ENST00000609318 N/A N/A 0.924±0.00 0.816±0.00 1.366±0.00 1.966±0.00 N/A N/A 1.038±0.00 3.290±0.00 N/A 2.553±0.00 N/A N/A
ENST00000612396 N/A N/A 0.389±0.00 1.098±0.00 N/A 0.696±0.00 N/A N/A 0.502±0.00 N/A 0.694±0.00 1.315±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0042788 IDA polysomal ribosome
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062146 larp4b La ribonucleoprotein domain family, member 4B protein_coding Danio_rerio
ENSMUSG00000033499 Larp4b La ribonucleoprotein domain family, member 4B protein_coding Mus_musculus

Loading