C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: La ribonucleoprotein domain family, member 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033499 Larp4b 10090 + 13:9093881-9174451 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091829 Larp4b-002 9093982-9174451 protein_coding
  ENSMUST00000188211 Larp4b-001 9093881-9171104 protein_coding
  ENSMUST00000188523 Larp4b-006 9136215-9143765 processed_transcript
  ENSMUST00000188939 Larp4b-003 9093907-9171296 protein_coding
  ENSMUST00000189330 Larp4b-005 9168361-9173121 retained_intron
  ENSMUST00000190041 Larp4b-008 9093912-9123931 protein_coding
  ENSMUST00000190331 Larp4b-007 9136435-9137200 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091829ENSMUST00000188211ENSMUST00000188939ENSMUST00000189330
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091829 5.255±2.72 7.559±3.01 10.054±0.09 8.801±1.43 3.378±0.85 9.259±0.88 2.185±1.27 2.232±0.32 7.646±4.49 5.318±4.21 6.555±3.53 2.304±0.63 5.860±2.47 N/A
ENSMUST00000188211 7.628±0.95 5.030±1.12 4.841±0.00 5.759±1.14 4.468±1.36 6.905±1.51 N/A N/A 5.864±1.98 5.632±0.60 N/A 5.277±2.45 11.726±1.61 2.479±0.49
ENSMUST00000188939 N/A 6.632±1.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189330 N/A N/A N/A N/A N/A N/A N/A N/A 1.588±0.00 2.458±0.04 N/A 2.613±0.61 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NT CIL_0001NT_0002 CGP 13:9093881-9668928

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0042788 ISS polysomal ribosome
GO:0044822 IEA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062146 larp4b La ribonucleoprotein domain family, member 4B protein_coding Danio_rerio
ENSG00000107929 LARP4B La ribonucleoprotein domain family, member 4B protein_coding Homo_sapiens

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