C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SH3 and PX domains 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107957 SH3PXD2A 9606 - 10:103594027-103855543 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315994 SH3PXD2A-002 103599520-103693623 processed_transcript
  ENST00000355946 SH3PXD2A-201 103594029-103855406 protein_coding
  ENST00000369774 SH3PXD2A-001 103594027-103855543 protein_coding
  ENST00000420222 SH3PXD2A-003 103601746-103801297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355946ENST00000369774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355946 N/A N/A N/A N/A N/A N/A 1.904±0.00 1.000±0.00 N/A N/A N/A N/A 1.128±0.00 1.487±0.00
ENST00000369774 4.197±0.00 1.234±0.00 0.449±0.00 3.890±0.00 1.600±0.06 2.734±0.22 0.888±0.41 N/A 0.693±0.37 1.405±1.12 2.357±0.38 2.850±1.19 2.586±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006T9 CIL_0006T9_0001 CGP 10:103493979-103855543
CIL_0006UD CIL_0006UD_0001 CGP 10:103594027-103918205

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002102 IDA podosome
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0006801 IDA superoxide metabolic process
GO:0030054 IEA cell junction
GO:0035091 IEA phosphatidylinositol binding
GO:0042995 IEA cell projection
GO:0072593 IEA reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060148 sh3pxd2aa SH3 and PX domains 2Aa protein_coding Danio_rerio
ENSDARG00000061758 sh3pxd2ab SH3 and PX domains 2Ab protein_coding Danio_rerio
ENSMUSG00000053617 Sh3pxd2a SH3 and PX domains 2A protein_coding Mus_musculus

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