C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAH (Asp-Glu-Ala-His) box polypeptide 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108406 DHX40 9606 + 17:59565525-59608345 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251241 DHX40-001 59565525-59608345 protein_coding
  ENST00000425628 DHX40-002 59565612-59607258 protein_coding
  ENST00000538926 DHX40-007 59577266-59599481 protein_coding
  ENST00000577549 DHX40-003 59603287-59607559 retained_intron
  ENST00000577596 DHX40-006 59565611-59573756 nonsense_mediated_decay
  ENST00000578204 DHX40-008 59599374-59605656 retained_intron
  ENST00000580030 DHX40-010 59565623-59575364 protein_coding
  ENST00000580218 DHX40-004 59565558-59574259 nonsense_mediated_decay
  ENST00000583439 DHX40-005 59587921-59599667 retained_intron
  ENST00000584385 DHX40-009 59565613-59573882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251241ENST00000425628ENST00000577549ENST00000577596ENST00000578204ENST00000580218
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251241 6.289±0.00 7.189±0.00 3.273±0.00 3.677±0.24 1.941±0.32 3.983±2.60 2.298±0.90 5.588±0.00 2.320±2.17 3.178±0.05 2.099±0.00 5.000±1.82 3.697±1.21 6.510±3.63
ENST00000425628 N/A N/A N/A N/A 1.143±0.00 N/A 0.339±0.00 N/A N/A 3.579±0.00 N/A 3.646±0.00 3.927±0.00 7.173±0.00
ENST00000577549 N/A N/A N/A N/A 1.133±0.00 0.857±0.00 N/A N/A N/A N/A N/A N/A N/A 2.725±0.00
ENST00000577596 N/A N/A N/A N/A N/A N/A 1.921±0.00 N/A 11.461±0.00 N/A N/A N/A N/A N/A
ENST00000578204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.494±0.00 N/A 8.119±0.00
ENST00000580218 N/A N/A 3.721±0.00 N/A N/A 3.825±0.00 N/A N/A N/A N/A 2.170±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000568 CIL_000568_0002 CGP 17:59565525-59696956

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0008026 IEA ATP-dependent helicase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041586 dhx40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 protein_coding Danio_rerio
ENSMUSG00000018425 Dhx40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 protein_coding Mus_musculus

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