C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: DEAH (Asp-Glu-Ala-His) box polypeptide 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580218 DHX40-004 ENSG00000108406 9606 + 17:59565558-59574259 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonMuscleENST00000580218
Transcript ID Bladder Colon Muscle
ENST00000580218 3.721±0.00 3.825±0.00 2.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000568 CIL_000568_0002 CGP 17:59565525-59696956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006810 IEA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018569 Dhx40-001 protein_coding Mus_musculus 0 628
ENSMUST00000148263 Dhx40-002 protein_coding Mus_musculus 0 287
ENSMUST00000131798 Dhx40-003 processed_transcript Mus_musculus 0 272

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