C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RecQ protein-like 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317905 RECQL5-001 ENSG00000108469 9606 - 17:75626854-75667189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverPlacentaTestisENST00000317905
Transcript ID Breast Liver Placenta Testis
ENST00000317905 8.270±0.00 4.588±0.00 7.853±1.74 14.801±5.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IO CIL_0007IO_0001 CGP 17:75626845-75667189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 IDA RNA polymerase II core binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003678 NAS DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 NAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006259 NAS DNA metabolic process
GO:0006260 IMP DNA replication
GO:0006281 IMP DNA repair
GO:0006310 IEA DNA recombination
GO:0007067 IMP mitotic nuclear division
GO:0008026 IEA ATP-dependent helicase activity
GO:0016591 IDA DNA-directed RNA polymerase II, holoenzyme
GO:0016787 IEA hydrolase activity
GO:0031965 IDA nuclear membrane
GO:0032508 NAS DNA duplex unwinding
GO:0034244 IDA negative regulation of transcription elongation from RNA polymerase II promoter
GO:0051304 IMP chromosome separation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021097 Recql5-001 protein_coding Mus_musculus 0 2588
ENSMUST00000144824 Recql5-004 retained_intron Mus_musculus 0 1698
ENSMUST00000140174 Recql5-002 nonsense_mediated_decay Mus_musculus 0 1676
ENSMUST00000134208 Recql5-003 nonsense_mediated_decay Mus_musculus 0 789
ENSMUST00000131578 Recql5-007 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000147172 Recql5-008 processed_transcript Mus_musculus 0 329
ENSMUST00000156776 Recql5-006 retained_intron Mus_musculus 0 243

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