C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 167
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108523 RNF167 9606 + 17:4940008-4945222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262482 RNF167-001 4940128-4945222 protein_coding
  ENST00000570328 RNF167-010 4940299-4942605 protein_coding
  ENST00000570492 RNF167-011 4940658-4944601 processed_transcript
  ENST00000571365 RNF167-007 4940046-4940836 processed_transcript
  ENST00000571816 RNF167-003 4940008-4945191 protein_coding
  ENST00000572382 RNF167-016 4942619-4945209 protein_coding
  ENST00000572430 RNF167-004 4940120-4945170 protein_coding
  ENST00000572554 RNF167-006 4940976-4943038 retained_intron
  ENST00000573404 RNF167-008 4940083-4942652 protein_coding
  ENST00000574548 RNF167-015 4944380-4944895 retained_intron
  ENST00000575111 RNF167-002 4940381-4945191 protein_coding
  ENST00000575400 RNF167-012 4940659-4944851 nonsense_mediated_decay
  ENST00000575524 RNF167-014 4943068-4944800 retained_intron
  ENST00000576229 RNF167-005 4940487-4945172 protein_coding
  ENST00000576452 RNF167-009 4940100-4942466 protein_coding
  ENST00000576965 RNF167-013 4942851-4945222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262482ENST00000571816ENST00000572382ENST00000572430ENST00000572554ENST00000574548ENST00000575111ENST00000576229ENST00000576965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262482 10.823±0.00 15.958±0.00 0.928±0.00 16.019±0.00 16.460±0.00 26.399±0.00 10.598±8.88 18.710±0.00 12.543±0.00 11.457±0.00 32.599±0.00 25.294±23.72 26.327±0.00 26.498±0.00
ENST00000571816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.091±1.95
ENST00000572382 15.493±0.00 25.479±0.00 N/A 26.842±0.00 22.922±0.00 39.074±0.00 N/A 30.852±0.00 15.164±0.00 13.693±0.00 N/A N/A N/A 30.637±0.00
ENST00000572430 N/A N/A 0.990±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 53.096±0.00 88.430±0.00 80.851±0.00
ENST00000574548 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.176±0.00 N/A N/A N/A N/A
ENST00000575111 N/A 12.785±0.00 1.229±0.00 N/A N/A N/A N/A N/A N/A 1.102±0.00 N/A 41.042±0.00 42.975±8.56 N/A
ENST00000576229 8.517±0.00 N/A N/A 5.015±0.00 3.240±0.00 5.865±0.00 1.522±0.00 12.780±4.22 7.507±4.59 7.212±5.50 30.865±0.00 12.616±10.87 42.434±0.00 31.214±0.00
ENST00000576965 N/A N/A N/A N/A N/A N/A N/A N/A 24.851±0.00 31.888±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WE CIL_0004WE_0001 CGP 17:4932297-4940251
CIL_00009G CIL_00009G_0001 CGP 17:4937130-4945222
CIL_0000C6 CIL_0000C6_0001 CGP 17:4940008-4949061

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0045786 IMP negative regulation of cell cycle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017636 rnf167 ring finger protein 167 protein_coding Danio_rerio
ENSMUSG00000040746 Rnf167 ring finger protein 167 protein_coding Mus_musculus

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