C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: superoxide dismutase 3, extracellular
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000109610 SOD3 9606 + 4:24789912-24800842 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382120 SOD3-001 24795463-24800842 protein_coding
  ENST00000593742 SOD3-003 24789947-24790606 retained_intron
  ENST00000598411 SOD3-002 24789912-24799683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382120ENST00000598411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382120 262.817±0.00 15.427±0.00 8.143±0.00 11.111±9.06 5.241±0.00 20.337±16.52 18.837±17.66 27.963±27.88 6.264±0.55 24.465±20.66 10.507±8.61 26.194±20.18 136.622±46.64 91.597±61.73
ENST00000598411 N/A N/A N/A N/A 3.368±0.00 N/A N/A N/A N/A 3.194±0.00 N/A 29.440±0.00 145.972±0.00 32.763±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OT CIL_0002OT_0001 CGP 4:24517441-24800842
CIL_0002OS CIL_0002OS_0001 CGP 4:24789912-24980204

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0004784 IBA superoxide dismutase activity
GO:0005507 IBA copper ion binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IBA cytoplasm
GO:0005796 TAS Golgi lumen
GO:0005802 IEA trans-Golgi network
GO:0006801 IEA superoxide metabolic process
GO:0006979 IEA response to oxidative stress
GO:0008201 IEA heparin binding
GO:0008270 IBA zinc ion binding
GO:0019430 IBA removal of superoxide radicals
GO:0031012 IDA extracellular matrix
GO:0046688 IEA response to copper ion
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079183 sod3b superoxide dismutase 3, extracellular b protein_coding Danio_rerio
ENSDARG00000094543 sod3b superoxide dismutase 3, extracellular b protein_coding Danio_rerio
ENSMUSG00000072941 Sod3 superoxide dismutase 3, extracellular protein_coding Mus_musculus

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