C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: membrane-spanning 4-domains, subfamily A, member 6A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110077 MS4A6A 9606 - 11:60172014-60184666 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000412309 MS4A6A-006 60172497-60183223 protein_coding
  ENST00000420732 MS4A6A-003 60172015-60183040 protein_coding
  ENST00000426738 MS4A6A-201 60172500-60184666 protein_coding
  ENST00000525549 MS4A6A-012 60177979-60183030 retained_intron
  ENST00000526677 MS4A6A-007 60179491-60183142 retained_intron
  ENST00000526697 MS4A6A-010 60182805-60183743 retained_intron
  ENST00000527254 MS4A6A-020 60173028-60183067 nonsense_mediated_decay
  ENST00000528851 MS4A6A-002 60172014-60183104 protein_coding
  ENST00000528925 MS4A6A-008 60183170-60184666 processed_transcript
  ENST00000529054 MS4A6A-004 60172047-60184633 protein_coding
  ENST00000529906 MS4A6A-015 60177019-60179965 processed_transcript
  ENST00000530179 MS4A6A-017 60178171-60183083 retained_intron
  ENST00000530839 MS4A6A-001 60172015-60184666 protein_coding
  ENST00000531531 MS4A6A-016 60181581-60184513 protein_coding
  ENST00000531914 MS4A6A-019 60172020-60178353 retained_intron
  ENST00000532169 MS4A6A-005 60179491-60184418 protein_coding
  ENST00000533023 MS4A6A-014 60172671-60183031 protein_coding
  ENST00000533409 MS4A6A-009 60181659-60183966 protein_coding
  ENST00000533660 MS4A6A-011 60181412-60182558 retained_intron
  ENST00000533989 MS4A6A-018 60172019-60181666 protein_coding
  ENST00000534596 MS4A6A-013 60179894-60184420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412309ENST00000420732ENST00000526677ENST00000526697ENST00000527254ENST00000528851ENST00000530179ENST00000530839ENST00000531914ENST00000533023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412309 4.512±0.00 7.907±0.00 N/A 0.361±0.00 6.694±0.00 1.773±0.00 3.868±0.00 4.420±0.54 9.492±0.00 3.957±0.00 0.263±0.00 2.604±0.96 12.728±0.07 2.790±0.00
ENST00000420732 8.547±0.00 7.063±0.00 1.568±0.00 0.867±0.00 15.272±0.00 5.284±3.58 7.876±0.00 11.517±6.37 16.759±0.00 13.330±6.66 2.636±0.00 6.065±2.58 23.913±1.39 N/A
ENST00000526677 N/A N/A N/A 0.215±0.11 1.526±0.00 N/A 0.757±0.00 1.455±0.00 2.937±0.00 N/A N/A 1.814±0.00 N/A N/A
ENST00000526697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.418±0.00 N/A N/A N/A
ENST00000527254 9.338±0.00 N/A N/A N/A 6.116±0.00 N/A 7.930±0.00 N/A 9.131±0.00 6.060±0.00 1.108±0.00 N/A 11.155±0.69 N/A
ENST00000528851 1.795±0.00 3.760±0.00 N/A N/A 3.895±0.00 2.087±0.71 N/A 2.416±0.00 4.025±0.96 1.689±0.00 0.247±0.05 2.101±0.17 4.961±0.98 2.023±0.00
ENST00000530179 N/A N/A N/A 1.971±1.08 N/A N/A N/A N/A N/A N/A N/A 5.436±0.00 17.233±0.00 N/A
ENST00000530839 N/A N/A 0.540±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.098±0.00 11.258±0.00 0.650±0.00
ENST00000531914 N/A 16.468±0.00 2.114±0.00 1.560±1.02 9.623±3.04 1.945±0.00 N/A 8.691±0.00 12.917±0.00 N/A 0.860±0.00 7.630±0.45 14.486±0.72 5.141±0.00
ENST00000533023 N/A N/A N/A 1.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MQ CIL_0002MQ_0001 CGP 11:60172014-60243088

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024677 Ms4a6b membrane-spanning 4-domains, subfamily A, member 6B protein_coding Mus_musculus
ENSMUSG00000024679 Ms4a6d membrane-spanning 4-domains, subfamily A, member 6D protein_coding Mus_musculus
ENSMUSG00000079419 Ms4a6c membrane-spanning 4-domains, subfamily A, member 6C protein_coding Mus_musculus

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