C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: membrane-spanning 4-domains, subfamily A, member 4A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110079 MS4A4A 9606 + 11:60280541-60308972 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337908 MS4A4A-001 60280586-60308972 protein_coding
  ENST00000343968 MS4A4A-002 60280656-60308968 nonsense_mediated_decay
  ENST00000527056 MS4A4A-005 60280669-60302717 nonsense_mediated_decay
  ENST00000529950 MS4A4A-004 60280685-60302644 nonsense_mediated_decay
  ENST00000529991 MS4A4A-006 60305733-60308364 retained_intron
  ENST00000532114 MS4A4A-003 60280541-60308180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337908ENST00000343968ENST00000527056ENST00000529950ENST00000529991ENST00000532114
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337908 10.717±0.00 7.756±0.00 N/A 0.762±0.69 5.036±0.00 2.293±1.02 2.982±2.63 2.075±1.03 3.830±2.41 4.984±0.61 0.891±0.00 2.871±1.56 21.980±7.59 3.842±0.00
ENST00000343968 2.064±0.00 N/A N/A N/A 0.734±0.00 N/A 1.516±0.00 1.682±0.00 2.006±0.99 2.956±0.00 N/A 0.280±0.00 5.783±2.90 N/A
ENST00000527056 N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.158±0.00 N/A N/A
ENST00000529991 N/A N/A 0.121±0.00 0.419±0.00 5.143±0.00 5.099±0.00 N/A 4.511±0.00 N/A 3.756±0.00 1.762±0.00 2.521±0.00 N/A N/A
ENST00000532114 N/A N/A N/A 0.068±0.00 5.062±0.46 1.994±0.00 N/A 3.590±0.00 N/A 6.487±0.00 N/A N/A 8.973±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LI CIL_0002LI_000K CGP 11:60201253-60308972
CIL_0002MR CIL_0002MR_0001 CGP 11:60280541-60396596

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007018 ms4a17a.6 membrane-spanning 4-domains, subfamily A, member 17A.6 protein_coding Danio_rerio
ENSDARG00000014024 ms4a17a.4 membrane-spanning 4-domains, subfamily A, member 17A.4 protein_coding Danio_rerio
ENSDARG00000020548 si:dkey-77f5.10 si:dkey-77f5.10 protein_coding Danio_rerio
ENSDARG00000028659 ms4a17c.2 membrane-spanning 4-domains, subfamily A, member 17c.2 protein_coding Danio_rerio
ENSDARG00000043796 ms4a17a.7 membrane-spanning 4-domains, subfamily A, member 17A.7 protein_coding Danio_rerio
ENSDARG00000043798 ms4a17a.1 membrane-spanning 4-domains, subfamily A, member 17A.1 protein_coding Danio_rerio
ENSDARG00000043802 ms4a17a.9 membrane-spanning 4-domains, subfamily A, member 17A.9 protein_coding Danio_rerio
ENSDARG00000053561 ms4a17a.11 membrane-spanning 4-domains, subfamily A, member 17A.11 protein_coding Danio_rerio
ENSDARG00000053563 si:ch73-56d11.4 si:ch73-56d11.4 protein_coding Danio_rerio
ENSDARG00000054898 ms4a17a.17 membrane-spanning 4-domains, subfamily A, member 17A.17 protein_coding Danio_rerio
ENSDARG00000091970 ms4a17a.3 membrane-spanning 4-domains, subfamily A, member 17A.3 protein_coding Danio_rerio
ENSDARG00000092204 ms4a17a.5 membrane-spanning 4-domains, subfamily A, member 17A.5 protein_coding Danio_rerio
ENSDARG00000092593 si:dkey-174k12.3 si:dkey-174k12.3 protein_coding Danio_rerio
ENSDARG00000093512 si:dkey-238j22.1 si:dkey-238j22.1 protein_coding Danio_rerio
ENSDARG00000093546 ms4a17a.2 membrane-spanning 4-domains, subfamily A, member 17a.2 protein_coding Danio_rerio
ENSDARG00000093910 FP015791.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000094643 ms4a17c.1 membrane-spanning 4-domains, subfamily A, member 17C.1 protein_coding Danio_rerio
ENSDARG00000094809 ms4a17a.14 membrane-spanning 4-domains, subfamily A, member 17A.14 protein_coding Danio_rerio
ENSDARG00000094854 ms4a17a.8 membrane-spanning 4-domains, subfamily A, member 17A.8 protein_coding Danio_rerio
ENSDARG00000095695 ms4a17a.10 membrane-spanning 4-domains, subfamily A, member 17A.10 protein_coding Danio_rerio
ENSDARG00000097527 si:ch73-56d11.3 si:ch73-56d11.3 protein_coding Danio_rerio
ENSMUSG00000024675 Ms4a4c membrane-spanning 4-domains, subfamily A, member 4C protein_coding Mus_musculus
ENSMUSG00000024678 Ms4a4d membrane-spanning 4-domains, subfamily A, member 4D protein_coding Mus_musculus
ENSMUSG00000056290 Ms4a4b membrane-spanning 4-domains, subfamily A, member 4B protein_coding Mus_musculus
ENSMUSG00000101389 Ms4a4a membrane-spanning 4-domains, subfamily A, member 4A protein_coding Mus_musculus

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