C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002MR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000110079-ENSG00000166926 CGP 9606 11:60280541-60396596
GeneTranscriptPositionBiotype
ENSG00000110079 (MS4A4A)
membrane-spanning 4-domains, subfamily A, member 4A 		ENST00000337908 (MS4A4A-001) 60280586-60308972 protein_coding
ENST00000343968 (MS4A4A-002) 60280656-60308968 nonsense_mediated_decay
ENST00000527056 (MS4A4A-005) 60280669-60302717 nonsense_mediated_decay
ENST00000529950 (MS4A4A-004) 60280685-60302644 nonsense_mediated_decay
ENST00000529991 (MS4A4A-006) 60305733-60308364 retained_intron
ENST00000532114 (MS4A4A-003) 60280541-60308180 protein_coding
ENSG00000166927 (MS4A7)
membrane-spanning 4-domains, subfamily A, member 7 		ENST00000300184 (MS4A7-001) 60378482-60394811 protein_coding
ENST00000358246 (MS4A7-201) 60378485-60395951 protein_coding
ENST00000528215 (MS4A7-009) 60378564-60386774 protein_coding
ENST00000528500 (MS4A7-004) 60378549-60383666 retained_intron
ENST00000528587 (MS4A7-006) 60389036-60393977 retained_intron
ENST00000528808 (MS4A7-003) 60378532-60389985 retained_intron
ENST00000530027 (MS4A7-011) 60378528-60393813 protein_coding
ENST00000530234 (MS4A7-010) 60378539-60395254 protein_coding
ENST00000530614 (MS4A7-005) 60378528-60392780 protein_coding
ENST00000533849 (MS4A7-007) 60389182-60393977 retained_intron
ENST00000534016 (MS4A7-002) 60378501-60394522 protein_coding
ENST00000534310 (MS4A7-008) 60386500-60392786 retained_intron
CIL_0002MR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024678-ENSMUSG00000024679 CGP 10090 19:11536801-11604849
GeneTranscriptPositionBiotype
ENSMUSG00000024678 (Ms4a4d)
membrane-spanning 4-domains, subfamily A, member 4D 		ENSMUST00000025581 (Ms4a4d-001) 11536801-11558467 protein_coding
ENSMUSG00000024679 (Ms4a6d)
membrane-spanning 4-domains, subfamily A, member 6D 		ENSMUST00000025582 (Ms4a6d-001) 11586604-11604849 protein_coding
ENSMUST00000125291 (Ms4a6d-004) 11586987-11593155 protein_coding
ENSMUST00000135351 (Ms4a6d-002) 11587964-11593015 retained_intron
ENSMUST00000155669 (Ms4a6d-003) 11586980-11593373 processed_transcript
ENSMUSG00000067555 (Gm10212)
predicted pseudogene 10212 		ENSMUST00000087884 (Gm10212-001) 11569449-11573112 unprocessed_pseudogene
CIL_0002MR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056290-ENSMUSG00000079419 CGP 10090 19:11443553-11482192
GeneTranscriptPositionBiotype
ENSMUSG00000056290 (Ms4a4b)
membrane-spanning 4-domains, subfamily A, member 4B 		ENSMUST00000035258 (Ms4a4b-001) 11443573-11463549 protein_coding
ENSMUST00000123758 (Ms4a4b-007) 11462489-11463288 retained_intron
ENSMUST00000136366 (Ms4a4b-004) 11443553-11458193 retained_intron
ENSMUST00000142135 (Ms4a4b-002) 11443558-11458177 retained_intron
ENSMUST00000144135 (Ms4a4b-006) 11459266-11463288 processed_transcript
ENSMUST00000145160 (Ms4a4b-003) 11443553-11459505 retained_intron
ENSMUST00000152242 (Ms4a4b-005) 11461139-11463288 retained_intron
ENSMUSG00000079419 (Ms4a6c)
membrane-spanning 4-domains, subfamily A, member 6C 		ENSMUST00000165310 (Ms4a6c-001) 11469366-11482192 protein_coding
ENSMUST00000187462 (Ms4a6c-002) 11469425-11472736 retained_intron
ENSMUSG00000099757 (RP23-32C18.5)
expressed sequence BE692007 		ENSMUST00000186054 (RP23-32C18.5-001) 11470166-11484577 antisense
ENSMUST00000186500 (RP23-32C18.5-002) 11480205-11484535 retained_intron
ENSMUST00000189306 (RP23-32C18.5-003) 11480087-11484578 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MR_0001ENSG00000110079ENST00000337908ENST00000343968ENST00000527056ENST00000529950ENST00000529991ENST00000532114ENSG00000166927ENST00000300184ENST00000358246ENST00000528215ENST00000528500ENST00000528587ENST00000528808ENST00000530027ENST00000530234ENST00000530614ENST00000533849ENST00000534016ENST00000534310CIL_0002MR_0002ENSMUSG00000024678ENSMUST00000025581ENSMUSG00000024679ENSMUST00000025582ENSMUST00000125291ENSMUST00000135351ENSMUST00000155669ENSMUSG00000067555ENSMUST00000087884CIL_0002MR_0003ENSMUSG00000056290ENSMUST00000035258ENSMUST00000123758ENSMUST00000136366ENSMUST00000142135ENSMUST00000144135ENSMUST00000145160ENSMUST00000152242ENSMUSG00000079419ENSMUST00000165310ENSMUST00000187462ENSMUSG00000099757ENSMUST00000186054ENSMUST00000186500ENSMUST00000189306
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MR_0001ENSG00000110079ENST00000337908ENST00000343968ENST00000527056ENST00000529950ENST00000529991ENST00000532114ENSG00000166927ENST00000300184ENST00000358246ENST00000528500ENST00000530234ENST00000530614ENST00000533849ENST00000534016CIL_0002MR_0002ENSMUSG00000024678ENSMUST00000025581ENSMUSG00000024679ENSMUST00000025582ENSMUST00000125291ENSMUST00000135351ENSMUST00000155669ENSMUSG00000067555ENSMUST00000087884CIL_0002MR_0003ENSMUSG00000056290ENSMUST00000035258ENSMUST00000123758ENSMUST00000136366ENSMUST00000142135ENSMUST00000144135ENSMUST00000145160ENSMUST00000152242ENSMUSG00000079419ENSMUST00000165310ENSMUST00000187462ENSMUSG00000099757ENSMUST00000186054ENSMUST00000186500ENSMUST00000189306
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110079 ENST00000337908 10.717±0.00 7.756±0.00 N/A 0.762±0.69 5.036±0.00 2.293±1.02 2.982±2.63 2.075±1.03 3.830±2.41 4.984±0.61 0.891±0.00 2.871±1.56 21.980±7.59 3.842±0.00
ENST00000343968 2.064±0.00 N/A N/A N/A 0.734±0.00 N/A 1.516±0.00 1.682±0.00 2.006±0.99 2.956±0.00 N/A 0.280±0.00 5.783±2.90 N/A
ENST00000527056 N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.158±0.00 N/A N/A
ENST00000529991 N/A N/A 0.121±0.00 0.419±0.00 5.143±0.00 5.099±0.00 N/A 4.511±0.00 N/A 3.756±0.00 1.762±0.00 2.521±0.00 N/A N/A
ENST00000532114 N/A N/A N/A 0.068±0.00 5.062±0.46 1.994±0.00 N/A 3.590±0.00 N/A 6.487±0.00 N/A N/A 8.973±0.00 N/A
ENSG00000166927 ENST00000300184 N/A 2.218±0.00 N/A N/A N/A N/A 0.651±0.00 N/A 2.090±0.57 6.709±0.00 0.261±0.00 0.616±0.00 3.749±0.44 N/A
ENST00000358246 N/A N/A N/A 0.168±0.00 N/A 0.822±0.00 0.504±0.26 2.635±0.00 3.793±0.00 9.607±0.00 N/A 2.021±0.93 2.111±0.00 N/A
ENST00000528215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528500 N/A N/A 1.421±0.00 1.168±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.625±0.00 N/A
ENST00000530614 N/A N/A N/A 1.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533849 N/A N/A N/A N/A N/A N/A N/A N/A 4.053±0.00 N/A N/A N/A N/A N/A
ENST00000534016 N/A N/A N/A N/A N/A 1.649±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024678 ENSMUST00000025581 13.711±1.51 7.391±0.31 15.360±4.88 0.025±0.02 19.345±2.30 11.094±4.82 7.289±1.29 1.513±0.26 2.006±1.89 24.341±8.47 1.774±0.31 12.843±5.60 0.476±0.64 0.555±0.43
ENSMUSG00000024679 ENSMUST00000025582 3.325±0.99 1.508±0.50 2.614±0.35 0.445±0.23 2.909±0.72 1.353±0.30 0.823±0.14 0.280±0.10 1.801±1.49 2.453±0.62 0.209±0.08 1.620±0.56 0.992±0.84 0.211±0.13
ENSMUST00000125291 1.207±0.00 0.302±0.00 N/A N/A N/A N/A N/A 0.356±0.00 N/A N/A 0.089±0.00 0.499±0.05 N/A 0.110±0.06
ENSMUST00000135351 N/A 2.420±1.18 N/A N/A 2.947±1.58 N/A N/A 0.221±0.04 0.401±0.02 1.658±0.04 N/A 1.966±1.34 N/A 0.421±0.00
ENSMUST00000155669 N/A N/A N/A 0.307±0.00 N/A 0.268±0.00 N/A 0.089±0.01 0.357±0.00 N/A 0.135±0.01 1.684±0.00 N/A 0.202±0.16
ENSMUSG00000067555 ENSMUST00000087884 N/A N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A 0.192±0.00 0.437±0.22 0.030±0.00 0.460±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000056290 ENSMUST00000035258 2.342±0.79 0.413±0.05 1.662±0.10 0.012±0.00 40.158±8.38 0.559±0.24 0.781±0.37 2.958±2.36 0.454±0.33 6.012±0.86 1.054±1.02 0.642±0.40 0.192±0.19 1.982±0.15
ENSMUST00000123758 N/A N/A N/A N/A N/A 0.275±0.00 0.129±0.00 N/A 0.177±0.01 N/A N/A N/A N/A N/A
ENSMUST00000136366 N/A N/A N/A N/A N/A 0.222±0.00 N/A N/A N/A N/A N/A 0.549±0.00 0.106±0.00 N/A
ENSMUST00000142135 0.101±0.00 N/A 0.073±0.00 0.003±0.00 N/A 0.208±0.00 0.045±0.03 N/A 0.044±0.04 0.446±0.00 0.055±0.05 0.029±0.01 0.005±0.00 0.109±0.01
ENSMUST00000144135 N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145160 N/A 0.391±0.00 N/A N/A N/A 0.279±0.00 N/A N/A 0.233±0.15 N/A N/A 0.344±0.17 0.048±0.00 N/A
ENSMUST00000152242 N/A 0.243±0.01 N/A 0.033±0.00 14.627±2.72 0.627±0.44 0.611±0.08 1.064±0.65 0.246±0.10 2.341±0.00 N/A 0.573±0.40 0.084±0.04 N/A
ENSMUSG00000079419 ENSMUST00000165310 2.438±0.66 2.165±0.34 1.466±0.00 0.197±0.02 4.695±1.44 0.947±0.39 0.465±0.22 0.356±0.13 0.949±0.63 2.271±0.35 0.103±0.04 1.343±0.71 0.387±0.34 0.627±0.00
ENSMUST00000187462 3.019±1.10 1.249±0.39 4.402±0.29 0.356±0.02 N/A 1.388±0.54 1.094±0.41 0.973±0.37 2.357±1.65 2.839±0.93 0.336±0.07 2.263±1.16 1.132±0.89 1.795±0.04
ENSMUSG00000099757 ENSMUST00000186054 N/A 1.017±0.00 N/A 0.366±0.00 N/A N/A N/A 0.891±0.00 0.223±0.00 N/A N/A 2.434±1.06 0.047±0.03 1.919±0.83
ENSMUST00000186500 0.991±0.26 0.392±0.11 0.871±0.19 0.095±0.05 3.707±0.75 0.615±0.15 0.393±0.17 0.245±0.14 0.597±0.55 1.061±0.31 0.120±0.08 0.476±0.22 0.200±0.15 N/A
ENSMUST00000189306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00 N/A

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