C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leprecan-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110811 LEPREL2 9606 + 12:6828410-6839851 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290510 LEPREL2-002 6828410-6839851 protein_coding
  ENST00000536140 LEPREL2-001 6829024-6839846 retained_intron
  ENST00000538102 LEPREL2-006 6830484-6837086 processed_transcript
  ENST00000540406 LEPREL2-012 6833530-6837768 retained_intron
  ENST00000541956 LEPREL2-014 6831288-6837685 retained_intron
  ENST00000542976 LEPREL2-013 6833662-6837536 retained_intron
  ENST00000544200 LEPREL2-011 6831823-6838046 retained_intron
  ENST00000544813 LEPREL2-007 6829308-6831244 processed_transcript
  ENST00000544949 LEPREL2-005 6831843-6837568 retained_intron
  ENST00000545596 LEPREL2-008 6833615-6834956 retained_intron
  ENST00000612048 LEPREL2-003 6829828-6839846 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290510ENST00000538102ENST00000540406ENST00000541956ENST00000544813ENST00000544949ENST00000612048
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290510 1.710±0.00 3.561±0.00 0.250±0.00 1.267±0.00 2.426±0.00 2.229±1.70 1.030±0.73 6.871±0.00 1.243±0.00 7.283±0.00 1.118±0.00 9.944±8.24 5.138±1.08 2.708±1.51
ENST00000538102 N/A N/A N/A N/A N/A N/A N/A N/A 0.511±0.00 N/A N/A N/A N/A N/A
ENST00000540406 N/A N/A N/A N/A N/A N/A N/A 0.669±0.00 N/A N/A N/A 2.331±0.00 N/A N/A
ENST00000541956 N/A N/A N/A 2.878±0.00 1.165±0.00 N/A N/A N/A N/A N/A 2.051±0.00 N/A N/A N/A
ENST00000544813 N/A N/A 0.501±0.00 N/A 1.266±0.00 N/A 0.571±0.00 N/A 1.531±0.00 0.774±0.00 N/A 1.724±0.00 N/A N/A
ENST00000544949 N/A N/A N/A N/A N/A 0.634±0.00 N/A N/A 1.399±0.00 1.731±0.00 N/A N/A N/A N/A
ENST00000612048 4.998±0.00 6.687±0.00 N/A N/A 1.606±0.90 8.182±0.00 N/A N/A 0.617±0.00 0.138±0.00 N/A 32.776±9.94 7.530±0.88 9.287±6.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XS CIL_0003XS_0002 CGP 12:6828410-6847393

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005788 TAS endoplasmic reticulum lumen
GO:0008285 IDA negative regulation of cell proliferation
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019511 IEA peptidyl-proline hydroxylation
GO:0019797 IEA procollagen-proline 3-dioxygenase activity
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057879 leprel2 leprecan-like 2 protein_coding Danio_rerio
ENSMUSG00000023191 Leprel2 leprecan-like 2 protein_coding Mus_musculus

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