C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110844 PRPF40B 9606 + 12:49568218-49644666 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261897 PRPF40B-002 49623620-49644666 protein_coding
  ENST00000380281 PRPF40B-001 49630544-49644666 protein_coding
  ENST00000508736 PRPF40B-008 49599826-49604719 processed_transcript
  ENST00000527253 PRPF40B-007 49583561-49604731 processed_transcript
  ENST00000546626 PRPF40B-014 49641946-49643245 retained_intron
  ENST00000547764 PRPF40B-004 49568236-49600142 processed_transcript
  ENST00000548399 PRPF40B-012 49637557-49642304 retained_intron
  ENST00000548436 PRPF40B-009 49623570-49634819 retained_intron
  ENST00000548825 PRPF40B-019 49623436-49644665 protein_coding
  ENST00000549547 PRPF40B-016 49637819-49643914 nonsense_mediated_decay
  ENST00000551063 PRPF40B-003 49568372-49630625 protein_coding
  ENST00000551111 PRPF40B-011 49630544-49633817 retained_intron
  ENST00000551269 PRPF40B-017 49642635-49643811 retained_intron
  ENST00000551320 PRPF40B-013 49632729-49633931 retained_intron
  ENST00000551418 PRPF40B-010 49623414-49632037 retained_intron
  ENST00000552301 PRPF40B-005 49568218-49583264 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000380281ENST00000548825
Transcript ID Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000380281 N/A N/A 1.065±0.00 1.013±0.00 2.370±0.00 5.867±0.00 2.416±0.00 14.732±0.00
ENST00000548825 0.896±0.00 2.492±0.00 N/A N/A 4.193±0.00 7.012±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000023007 Prpf40b PRP40 pre-mRNA processing factor 40 homolog B (yeast) protein_coding Mus_musculus

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