C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380281 PRPF40B-001 ENSG00000110844 9606 + 12:49630544-49644666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverMuscleOvaryPlacentaTestisENST00000380281
Transcript ID Kidney Liver Muscle Ovary Placenta Testis
ENST00000380281 1.065±0.00 1.013±0.00 2.370±0.00 5.867±0.00 2.416±0.00 14.732±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118287 Prpf40b-006 protein_coding Mus_musculus 0 4117
ENSMUST00000145482 Prpf40b-001 protein_coding Mus_musculus 0 4052
ENSMUST00000136980 Prpf40b-011 protein_coding Mus_musculus 0 3855
ENSMUST00000150641 Prpf40b-003 retained_intron Mus_musculus 0 3629
ENSMUST00000023745 Prpf40b-010 protein_coding Mus_musculus 0 3572
ENSMUST00000138036 Prpf40b-005 retained_intron Mus_musculus 0 2261
ENSMUST00000130575 Prpf40b-002 retained_intron Mus_musculus 0 2261
ENSMUST00000139330 Prpf40b-016 retained_intron Mus_musculus 0 1170
ENSMUST00000140806 Prpf40b-013 nonsense_mediated_decay Mus_musculus 0 1088
ENSMUST00000134034 Prpf40b-007 protein_coding Mus_musculus 0 1085
ENSMUST00000126955 Prpf40b-015 protein_coding Mus_musculus 0 824
ENSMUST00000128352 Prpf40b-012 protein_coding Mus_musculus 0 710
ENSMUST00000150636 Prpf40b-008 protein_coding Mus_musculus 0 684
ENSMUST00000153692 Prpf40b-014 retained_intron Mus_musculus 0 521
ENSMUST00000124275 Prpf40b-009 retained_intron Mus_musculus 0 339

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