C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023007 Prpf40b 10090 + 15:99295087-99317018 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023745 Prpf40b-010 99303283-99316499 protein_coding
  ENSMUST00000118287 Prpf40b-006 99303284-99317007 protein_coding
  ENSMUST00000124275 Prpf40b-009 99314868-99315794 retained_intron
  ENSMUST00000126955 Prpf40b-015 99315540-99317010 protein_coding
  ENSMUST00000128352 Prpf40b-012 99295087-99305965 protein_coding
  ENSMUST00000130575 Prpf40b-002 99295241-99316114 retained_intron
  ENSMUST00000134034 Prpf40b-007 99314877-99316671 protein_coding
  ENSMUST00000136980 Prpf40b-011 99295895-99317010 protein_coding
  ENSMUST00000138036 Prpf40b-005 99295241-99316114 retained_intron
  ENSMUST00000139330 Prpf40b-016 99307885-99315093 retained_intron
  ENSMUST00000140806 Prpf40b-013 99295244-99307077 nonsense_mediated_decay
  ENSMUST00000145482 Prpf40b-001 99295271-99317018 protein_coding
  ENSMUST00000150636 Prpf40b-008 99314906-99316813 protein_coding
  ENSMUST00000150641 Prpf40b-003 99295239-99317018 retained_intron
  ENSMUST00000153692 Prpf40b-014 99309903-99315890 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023745ENSMUST00000118287ENSMUST00000126955ENSMUST00000128352ENSMUST00000130575ENSMUST00000134034ENSMUST00000136980ENSMUST00000138036ENSMUST00000139330ENSMUST00000140806ENSMUST00000145482ENSMUST00000150636ENSMUST00000150641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023745 N/A N/A N/A 10.036±4.04 N/A N/A N/A 2.110±0.00 1.065±0.21 N/A 1.826±0.36 15.989±3.26 2.402±1.66 11.008±3.04
ENSMUST00000118287 1.506±0.16 N/A 3.641±0.00 N/A N/A N/A N/A N/A 0.799±0.05 N/A 2.954±0.78 N/A 0.704±0.13 6.440±0.84
ENSMUST00000126955 17.059±4.81 19.436±5.92 20.033±0.76 24.257±7.75 18.070±1.04 11.055±2.63 8.001±2.34 13.927±0.87 5.237±1.36 19.627±1.47 5.998±0.26 25.399±4.19 5.024±2.75 27.025±6.88
ENSMUST00000128352 N/A 6.906±0.87 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130575 4.309±0.42 2.542±0.05 N/A 11.511±3.33 2.540±0.58 1.371±0.09 1.377±0.18 2.019±0.25 1.127±0.23 2.353±0.34 2.012±0.33 4.714±0.68 1.661±1.19 4.847±0.25
ENSMUST00000134034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.186±0.00 N/A
ENSMUST00000136980 N/A N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A 2.133±0.00 N/A 5.496±0.00 N/A N/A
ENSMUST00000138036 2.636±1.04 4.657±1.61 N/A N/A 2.908±0.86 2.057±0.61 1.116±0.09 1.742±0.37 0.980±0.39 2.894±0.58 1.470±0.01 6.324±2.01 0.885±0.09 N/A
ENSMUST00000139330 N/A N/A N/A 52.585±0.00 N/A N/A N/A N/A N/A N/A N/A 60.834±0.00 12.007±2.98 71.809±0.00
ENSMUST00000140806 N/A N/A N/A N/A N/A N/A N/A N/A 1.618±0.00 N/A N/A 10.246±0.00 N/A N/A
ENSMUST00000145482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.480±0.22 N/A N/A N/A
ENSMUST00000150636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.144±1.25 N/A
ENSMUST00000150641 3.011±1.62 3.626±0.35 3.368±0.05 10.697±5.65 2.119±0.54 1.452±0.27 1.836±0.54 2.204±0.44 0.835±0.22 2.598±0.10 1.396±0.28 6.975±1.97 0.598±0.13 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000110844 PRPF40B PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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