C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-CoA synthetase short-chain family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111058 ACSS3 9606 + 12:80936414-81261205 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261206 ACSS3-002 81078057-81255466 protein_coding
  ENST00000546664 ACSS3-006 81174832-81220031 nonsense_mediated_decay
  ENST00000548058 ACSS3-001 81077211-81261205 protein_coding
  ENST00000548324 ACSS3-003 81151651-81255803 retained_intron
  ENST00000548387 ACSS3-004 81134795-81143502 retained_intron
  ENST00000549175 ACSS3-007 80937815-81134963 protein_coding
  ENST00000551745 ACSS3-005 81174558-81199822 retained_intron
  ENST00000616449 ACSS3-008 80936414-80940246 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261206ENST00000548058ENST00000548324ENST00000548387
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261206 7.441±0.00 N/A 3.995±0.00 5.705±0.00 1.828±0.93 2.588±1.27 5.437±1.50 6.184±3.76 2.912±0.00 1.310±0.00 2.970±1.31 0.525±0.28 4.577±0.00
ENST00000548058 1.841±0.00 0.668±0.00 0.995±0.00 1.009±0.00 0.208±0.00 0.900±0.00 1.772±0.01 1.447±0.46 0.914±0.00 0.247±0.00 1.136±0.72 0.250±0.23 1.079±0.00
ENST00000548324 5.147±0.00 1.687±0.00 N/A 2.094±0.00 N/A N/A 4.112±0.00 N/A 2.220±0.00 N/A 2.523±0.30 N/A N/A
ENST00000548387 N/A N/A N/A N/A N/A N/A 14.808±0.00 N/A 9.742±0.00 4.022±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BG CIL_0002BG_0002 CGP 12:80716912-80937925
CIL_0002BF CIL_0002BF_0002 CGP 12:80792520-81261205
CIL_000218 CIL_000218_0002 CGP 12:80936414-81759553

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003987 IEA acetate-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0008152 IEA metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032218 acss3 acyl-CoA synthetase short-chain family member 3 protein_coding Danio_rerio
ENSMUSG00000035948 Acss3 acyl-CoA synthetase short-chain family member 3 protein_coding Mus_musculus

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