C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000218_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032218-ENSDARG00000013000 CGP 7955 4:20803212-21143563
GeneTranscriptPositionBiotype
ENSDARG00000013000 (ppfia2)
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 		ENSDART00000034834 (ppfia2-201) 20898006-20976569 protein_coding
ENSDART00000142140 (ppfia2-001) 20898006-21143563 protein_coding
ENSDARG00000032218 (acss3)
acyl-CoA synthetase short-chain family member 3 		ENSDART00000140400 (acss3-001) 20803212-20893985 protein_coding
ENSDARG00000096999 (si:dkey-231a18.2)
si:dkey-231a18.2 		ENSDART00000156001 (si:dkey-231a18.2-001) 20901784-20903134 antisense
CIL_000218_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111058-ENSG00000139220 CGP 9606 12:80936414-81759553
GeneTranscriptPositionBiotype
ENSG00000111052 (LIN7A)
lin-7 homolog A (C. elegans) 		ENST00000261203 (LIN7A-002) 80797575-80937780 nonsense_mediated_decay
ENST00000549417 (LIN7A-003) 80841689-80937704 protein_coding
ENST00000552093 (LIN7A-004) 80845564-80889348 protein_coding
ENST00000552864 (LIN7A-001) 80792520-80937925 protein_coding
ENSG00000111058 (ACSS3)
acyl-CoA synthetase short-chain family member 3 		ENST00000261206 (ACSS3-002) 81078057-81255466 protein_coding
ENST00000546664 (ACSS3-006) 81174832-81220031 nonsense_mediated_decay
ENST00000548058 (ACSS3-001) 81077211-81261205 protein_coding
ENST00000548324 (ACSS3-003) 81151651-81255803 retained_intron
ENST00000548387 (ACSS3-004) 81134795-81143502 retained_intron
ENST00000549175 (ACSS3-007) 80937815-81134963 protein_coding
ENST00000551745 (ACSS3-005) 81174558-81199822 retained_intron
ENST00000616449 (ACSS3-008) 80936414-80940246 processed_transcript
ENSG00000258026 (RP11-543H12.1)
 ENST00000547123 (RP11-543H12.1-001) 81094375-81125845 antisense
ENSG00000258162 (RP11-315E17.1)
 ENST00000546936 (RP11-315E17.1-001) 81378042-81431411 antisense
ENST00000550272 (RP11-315E17.1-002) 81417261-81472954 antisense
ENSG00000258375 (RP11-617J18.1)
 ENST00000551366 (RP11-617J18.1-001) 81545326-81546450 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000218_0001ENSDARG00000013000ENSDART00000034834ENSDART00000142140ENSDARG00000032218ENSDART00000140400ENSDARG00000096999ENSDART00000156001CIL_000218_0002ENSG00000111052ENST00000261203ENST00000549417ENST00000552093ENST00000552864ENSG00000111058ENST00000261206ENST00000546664ENST00000548058ENST00000548324ENST00000548387ENST00000549175ENST00000551745ENST00000616449ENSG00000258026ENST00000547123ENSG00000258162ENST00000546936ENST00000550272ENSG00000258375ENST00000551366
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000218_0001ENSDARG00000013000ENSDART00000034834ENSDART00000142140ENSDARG00000032218ENSDART00000140400ENSDARG00000096999ENSDART00000156001CIL_000218_0002ENSG00000111052ENST00000261203ENST00000552864ENSG00000111058ENST00000261206ENST00000548058ENST00000548324ENST00000548387ENSG00000258026ENST00000547123ENSG00000258162ENST00000546936ENST00000550272ENSG00000258375ENST00000551366
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013000 ENSDART00000034834 N/A N/A N/A 5.128±1.26 N/A N/A 0.754±0.00 N/A 0.050±0.00 N/A N/A N/A N/A N/A
ENSDART00000142140 N/A N/A N/A 9.214±0.00 N/A N/A 0.312±0.00 0.229±0.00 N/A N/A 0.626±0.00 N/A N/A N/A
ENSDARG00000032218 ENSDART00000140400 N/A N/A N/A N/A N/A N/A 1.888±0.25 2.213±1.08 0.273±0.00 N/A 1.256±0.00 N/A N/A N/A
ENSDARG00000096999 ENSDART00000156001 N/A N/A N/A 1.295±0.44 N/A N/A 0.314±0.11 0.066±0.00 0.066±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111052 ENST00000261203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.983±0.00 N/A 23.967±5.68
ENST00000549417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552864 2.754±0.00 1.135±0.00 1.883±0.00 7.515±0.60 1.571±0.69 0.957±0.37 1.002±0.27 4.019±0.50 2.653±0.79 2.166±0.12 0.302±0.00 1.066±0.34 0.420±0.20 N/A
ENSG00000111058 ENST00000261206 7.441±0.00 N/A 3.995±0.00 N/A 5.705±0.00 1.828±0.93 2.588±1.27 5.437±1.50 6.184±3.76 2.912±0.00 1.310±0.00 2.970±1.31 0.525±0.28 4.577±0.00
ENST00000546664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548058 1.841±0.00 0.668±0.00 0.995±0.00 N/A 1.009±0.00 0.208±0.00 0.900±0.00 1.772±0.01 1.447±0.46 0.914±0.00 0.247±0.00 1.136±0.72 0.250±0.23 1.079±0.00
ENST00000548324 5.147±0.00 1.687±0.00 N/A N/A 2.094±0.00 N/A N/A 4.112±0.00 N/A 2.220±0.00 N/A 2.523±0.30 N/A N/A
ENST00000548387 N/A N/A N/A N/A N/A N/A N/A 14.808±0.00 N/A 9.742±0.00 4.022±0.00 N/A N/A N/A
ENST00000549175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258026 ENST00000547123 0.013±0.00 N/A 0.374±0.00 N/A N/A N/A 0.048±0.00 0.041±0.00 N/A N/A N/A 0.032±0.00 N/A 1.799±0.97
ENSG00000258162 ENST00000546936 N/A 0.041±0.00 0.159±0.00 N/A 0.036±0.01 0.260±0.00 N/A N/A N/A N/A N/A 0.026±0.00 N/A 0.132±0.11
ENST00000550272 N/A N/A N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000258375 ENST00000551366 0.023±0.00 0.116±0.00 N/A 0.275±0.08 0.057±0.00 0.021±0.00 0.043±0.00 0.114±0.00 0.336±0.00 0.029±0.00 0.119±0.00 N/A 0.081±0.00 0.101±0.07

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