C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB5B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111540 RAB5B 9606 + 12:55973913-55996683 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360299 RAB5B-001 55974011-55996683 protein_coding
  ENST00000448789 RAB5B-003 55974101-55993086 protein_coding
  ENST00000546810 RAB5B-008 55974078-55990218 retained_intron
  ENST00000548068 RAB5B-005 55974084-55990711 protein_coding
  ENST00000549034 RAB5B-009 55989956-55991096 retained_intron
  ENST00000549505 RAB5B-002 55974074-55994706 nonsense_mediated_decay
  ENST00000549915 RAB5B-006 55974097-55987092 protein_coding
  ENST00000550283 RAB5B-010 55990721-55991940 retained_intron
  ENST00000551459 RAB5B-007 55974101-55990084 protein_coding
  ENST00000553116 RAB5B-004 55973913-55994706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360299ENST00000549034ENST00000549505ENST00000553116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360299 N/A N/A N/A 5.097±2.74 N/A N/A N/A N/A N/A N/A 3.456±0.00 N/A N/A N/A
ENST00000549034 N/A N/A 9.106±0.00 N/A N/A 12.959±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549505 24.626±0.00 15.753±0.00 N/A 10.218±0.00 19.770±0.00 24.304±0.00 9.766±0.00 11.475±0.00 7.504±0.00 12.774±0.00 11.345±0.00 17.764±4.56 10.687±0.29 20.705±0.00
ENST00000553116 N/A 6.994±0.00 7.267±0.00 28.880±12.21 16.683±3.85 19.425±7.71 20.106±11.63 22.377±9.30 12.994±3.12 23.590±10.26 17.679±6.32 25.453±13.67 17.259±5.69 27.770±2.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007032 IEA endosome organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 TAS:IEA membrane
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0030100 IEA regulation of endocytosis
GO:0030139 IEA endocytic vesicle
GO:0030742 IDA GTP-dependent protein binding
GO:0048227 IMP plasma membrane to endosome transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000000711 Rab5b RAB5B, member RAS oncogene family protein_coding Mus_musculus

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