C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB5B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360299 RAB5B-001 ENSG00000111540 9606 + 12:55974011-55996683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000360299
Transcript ID Brain Muscle
ENST00000360299 5.097±2.74 3.456±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007032 IEA endosome organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 TAS:IEA membrane
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0030100 IEA regulation of endocytosis
GO:0030139 IEA endocytic vesicle
GO:0030742 IDA GTP-dependent protein binding
GO:0048227 IMP plasma membrane to endosome transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000727 Rab5b-201 protein_coding Mus_musculus 0 1657
ENSMUST00000120190 Gm13991-001 processed_pseudogene Mus_musculus 0 942
ENSMUST00000107364 Rab5c-001 protein_coding Mus_musculus 0 436
ENSMUST00000019317 Rab5c-002 protein_coding Mus_musculus 0 305
ENSMUST00000155843 Rab5c-004 protein_coding Mus_musculus 2.94273e-44 185

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