C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB5B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553116 RAB5B-004 ENSG00000111540 9606 + 12:55973913-55994706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000553116
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000553116 6.994±0.00 7.267±0.00 28.880±12.21 16.683±3.85 19.425±7.71 20.106±11.63 22.377±9.30 12.994±3.12 23.590±10.26 17.679±6.32 25.453±13.67 17.259±5.69 27.770±2.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 TAS:IEA membrane
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0030742 IDA GTP-dependent protein binding
GO:0048227 IMP plasma membrane to endosome transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000727 Rab5b-201 protein_coding Mus_musculus 0 1546
ENSMUST00000120190 Gm13991-001 processed_pseudogene Mus_musculus 0 942
ENSMUST00000107364 Rab5c-001 protein_coding Mus_musculus 0 436
ENSMUST00000019317 Rab5c-002 protein_coding Mus_musculus 0 305
ENSMUST00000155843 Rab5c-004 protein_coding Mus_musculus 1.96182e-44 185

Loading