C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glyceraldehyde-3-phosphate dehydrogenase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111640 GAPDH 9606 + 12:6533927-6538374 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229239 GAPDH-001 6533927-6538371 protein_coding
  ENST00000396856 GAPDH-004 6534532-6538340 protein_coding
  ENST00000396858 GAPDH-008 6535302-6538315 protein_coding
  ENST00000396859 GAPDH-003 6534754-6538339 protein_coding
  ENST00000396861 GAPDH-002 6534534-6538359 protein_coding
  ENST00000466525 GAPDH-007 6534792-6538337 retained_intron
  ENST00000466588 GAPDH-005 6534754-6538317 retained_intron
  ENST00000474249 GAPDH-006 6534541-6538314 retained_intron
  ENST00000492719 GAPDH-011 6534533-6537798 retained_intron
  ENST00000496049 GAPDH-010 6534512-6535141 retained_intron
  ENST00000619601 GAPDH-201 6536605-6538374 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229239ENST00000396858ENST00000396859ENST00000396861ENST00000492719ENST00000619601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 117.836±0.00 N/A
ENST00000396858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.999±0.00
ENST00000396859 183.679±0.00 247.608±0.00 38.232±0.00 338.008±13.90 169.917±45.29 183.728±76.04 398.137±234.78 190.900±72.58 187.615±79.51 171.228±119.69 1523.375±283.07 501.496±391.16 945.351±608.83 151.605±97.90
ENST00000396861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 258.833±0.00 N/A N/A
ENST00000492719 370.620±0.00 340.464±0.00 35.564±0.00 435.817±0.00 408.301±0.00 210.019±156.06 461.487±0.00 282.810±0.00 200.516±0.00 193.812±0.00 1081.798±481.71 436.726±480.16 495.488±0.00 296.058±124.92
ENST00000619601 132.857±0.00 N/A N/A 171.942±0.00 289.742±0.00 216.805±0.00 N/A 160.505±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0004365 ISS glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005811 IDA lipid particle
GO:0005829 ISS cytosol
GO:0005886 IDA plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006006 TAS:IEA glucose metabolic process
GO:0006094 TAS gluconeogenesis
GO:0006096 IEA glycolytic process
GO:0008017 ISS microtubule binding
GO:0015630 ISS microtubule cytoskeleton
GO:0016020 IDA membrane
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0017148 IMP negative regulation of translation
GO:0030529 IDA ribonucleoprotein complex
GO:0031982 IDA vesicle
GO:0035605 ISS peptidyl-cysteine S-nitrosylase activity
GO:0035606 ISS peptidyl-cysteine S-trans-nitrosylation
GO:0042802 IPI identical protein binding
GO:0044281 TAS small molecule metabolic process
GO:0050661 IEA NADP binding
GO:0050821 ISS protein stabilization
GO:0051287 IEA NAD binding
GO:0051402 ISS neuron apoptotic process
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043457 gapdh glyceraldehyde-3-phosphate dehydrogenase protein_coding Danio_rerio
ENSMUSG00000057666 Gapdh glyceraldehyde-3-phosphate dehydrogenase protein_coding Mus_musculus
ENSMUSG00000078308 Gm7293 predicted gene 7293 protein_coding Mus_musculus
ENSMUSG00000097148 Gm3839 predicted pseudogene 3839 protein_coding Mus_musculus
ENSMUSG00000098456 Gm12117 predicted gene 12117 protein_coding Mus_musculus
ENSMUSG00000099294 Gm11214 predicted gene 11214 protein_coding Mus_musculus

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