C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glyceraldehyde-3-phosphate dehydrogenase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057666 Gapdh 10090 - 6:125161853-125166467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000073605 Gapdh-201 125161854-125166467 protein_coding
  ENSMUST00000117757 Gapdh-003 125161853-125166467 protein_coding
  ENSMUST00000118875 Gapdh-001 125161854-125165773 protein_coding
  ENSMUST00000144205 Gapdh-005 125162843-125164916 processed_transcript
  ENSMUST00000144588 Gapdh-004 125164597-125165605 retained_intron
  ENSMUST00000147954 Gapdh-006 125161853-125162527 retained_intron
  ENSMUST00000182052 Gapdh-011 125163175-125165603 protein_coding
  ENSMUST00000182115 Gapdh-016 125162871-125165590 processed_transcript
  ENSMUST00000182277 Gapdh-010 125163288-125165603 protein_coding
  ENSMUST00000182464 Gapdh-013 125162771-125163339 retained_intron
  ENSMUST00000182670 Gapdh-012 125163346-125165603 processed_transcript
  ENSMUST00000183272 Gapdh-017 125162064-125165576 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073605ENSMUST00000117757ENSMUST00000118875ENSMUST00000147954ENSMUST00000182115ENSMUST00000183272
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073605 N/A N/A N/A 81.870±0.00 N/A N/A N/A N/A N/A N/A N/A 129.269±11.83 140.349±70.44 2.005±0.00
ENSMUST00000117757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.839±0.00
ENSMUST00000118875 445.337±55.00 132.909±78.56 563.762±7.19 363.807±191.20 621.368±316.91 426.868±41.51 1129.521±151.10 932.247±61.78 522.220±282.40 210.800±38.41 2864.439±193.53 230.865±100.92 456.727±530.57 33.158±15.67
ENSMUST00000147954 N/A 249.038±0.00 N/A 119.797±0.00 322.320±0.00 N/A N/A N/A 339.515±35.05 N/A N/A N/A 93.184±0.00 N/A
ENSMUST00000182115 975.035±130.10 1101.046±189.90 417.637±38.51 339.700±89.24 1013.665±269.01 1156.218±66.06 1423.758±452.57 1783.733±338.48 851.819±224.41 387.501±29.95 N/A 601.651±238.66 930.726±109.00 100.996±14.73
ENSMUST00000183272 156.233±29.57 360.602±86.20 150.261±0.00 159.695±13.79 284.301±110.69 249.246±46.37 N/A 292.210±28.62 353.474±85.90 77.250±10.48 877.495±152.49 279.821±48.27 253.151±55.13 24.740±5.23

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0004365 ISS glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006006 IEA glucose metabolic process
GO:0006096 IEA glycolytic process
GO:0008017 ISS microtubule binding
GO:0015630 ISS microtubule cytoskeleton
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0017148 IDA negative regulation of translation
GO:0019899 IPI enzyme binding
GO:0035605 ISS peptidyl-cysteine S-nitrosylase activity
GO:0035606 ISS peptidyl-cysteine S-trans-nitrosylation
GO:0050661 IEA NADP binding
GO:0050821 ISS protein stabilization
GO:0051287 IEA NAD binding
GO:0051402 ISS neuron apoptotic process
GO:0055114 IEA oxidation-reduction process
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043457 gapdh glyceraldehyde-3-phosphate dehydrogenase protein_coding Danio_rerio
ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase protein_coding Homo_sapiens

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