C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysophosphatidylcholine acyltransferase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111684 LPCAT3 9606 - 12:6976186-7018510 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261407 LPCAT3-001 6976186-7018510 protein_coding
  ENST00000535021 LPCAT3-011 6976806-6981148 processed_transcript
  ENST00000535479 LPCAT3-003 6976186-7018477 nonsense_mediated_decay
  ENST00000536797 LPCAT3-004 6977840-7018474 nonsense_mediated_decay
  ENST00000536971 LPCAT3-009 6981542-7018474 processed_transcript
  ENST00000537179 LPCAT3-007 6978041-6979270 retained_intron
  ENST00000538910 LPCAT3-008 6981809-7018474 nonsense_mediated_decay
  ENST00000538987 LPCAT3-012 6979595-6981157 retained_intron
  ENST00000540060 LPCAT3-010 6980707-6981858 processed_transcript
  ENST00000540090 LPCAT3-006 6977647-7018474 nonsense_mediated_decay
  ENST00000543794 LPCAT3-005 6977699-7018474 nonsense_mediated_decay
  ENST00000545459 LPCAT3-013 6981560-6983465 processed_transcript
  ENST00000620843 LPCAT3-014 6981294-6982783 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyMusclePlacentaENST00000261407ENST00000535479
Transcript ID Bladder Brain Kidney Muscle Placenta
ENST00000261407 3.774±0.00 8.082±0.00 33.812±0.00 11.222±5.11 54.174±26.72
ENST00000535479 2.592±0.00 1.610±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006644 TAS phospholipid metabolic process
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0036150 TAS phosphatidylserine acyl-chain remodeling
GO:0036151 TAS phosphatidylcholine acyl-chain remodeling
GO:0036152 TAS phosphatidylethanolamine acyl-chain remodeling
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0047184 IMP 1-acylglycerophosphocholine O-acyltransferase activity
GO:0097006 IEA regulation of plasma lipoprotein particle levels

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075178 lpcat3 lysophosphatidylcholine acyltransferase 3 protein_coding Danio_rerio
ENSMUSG00000004270 Lpcat3 lysophosphatidylcholine acyltransferase 3 protein_coding Mus_musculus

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