C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB35, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111737 RAB35 9606 - 12:120095095-120117502 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229340 RAB35-001 120095095-120116839 protein_coding
  ENST00000534951 RAB35-003 120096904-120116767 protein_coding
  ENST00000538903 RAB35-005 120097246-120116736 protein_coding
  ENST00000540803 RAB35-007 120098948-120116767 retained_intron
  ENST00000543364 RAB35-006 120097266-120099462 processed_transcript
  ENST00000544304 RAB35-002 120096366-120117502 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229340ENST00000534951ENST00000538903ENST00000543364
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229340 23.809±0.00 15.639±0.00 N/A 7.744±3.50 9.204±7.20 8.122±6.74 4.393±3.84 9.338±7.76 4.899±2.53 9.743±8.25 10.697±0.00 15.770±9.22 19.964±3.31 10.200±3.84
ENST00000534951 N/A N/A 0.563±0.00 N/A 1.431±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538903 N/A N/A N/A N/A N/A 1.664±0.00 N/A 2.218±0.00 N/A 1.693±0.00 N/A 9.032±7.25 17.416±0.00 N/A
ENST00000543364 N/A N/A N/A N/A N/A N/A 0.997±0.00 N/A N/A N/A 2.631±0.00 23.246±0.00 24.348±0.00 17.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005546 IDA phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005886 IDA plasma membrane
GO:0005905 IDA coated pit
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008104 IMP protein localization
GO:0010008 ISS endosome membrane
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016197 IMP endosomal transport
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0031175 ISS neuron projection development
GO:0031253 IDA cell projection membrane
GO:0036010 IMP protein localization to endosome
GO:0045171 IDA intercellular bridge
GO:0045334 IDA clathrin-coated endocytic vesicle
GO:0048227 IMP plasma membrane to endosome transport
GO:0070062 IDA extracellular vesicular exosome
GO:1990090 ISS cellular response to nerve growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058425 rab35b RAB35, member RAS oncogene family b protein_coding Danio_rerio
ENSDARG00000063142 RAB35 (2 of 2) RAB35, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000029518 Rab35 RAB35, member RAS oncogene family protein_coding Mus_musculus

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