C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB35, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000229340 RAB35-001 ENSG00000111737 9606 - 12:120095095-120116839 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229340
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229340 23.809±0.00 15.639±0.00 7.744±3.50 9.204±7.20 8.122±6.74 4.393±3.84 9.338±7.76 4.899±2.53 9.743±8.25 10.697±0.00 15.770±9.22 19.964±3.31 10.200±3.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005546 IDA phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005886 IDA plasma membrane
GO:0005905 IDA coated pit
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008104 IMP protein localization
GO:0010008 ISS endosome membrane
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016197 IMP endosomal transport
GO:0019003 IDA GDP binding
GO:0019882 IMP antigen processing and presentation
GO:0031175 ISS neuron projection development
GO:0031253 IDA cell projection membrane
GO:0036010 IMP protein localization to endosome
GO:0045171 IDA intercellular bridge
GO:0045334 IDA clathrin-coated endocytic vesicle
GO:0048227 IMP plasma membrane to endosome transport
GO:0070062 IDA extracellular vesicular exosome
GO:1990090 ISS cellular response to nerve growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031492 Rab35-001 protein_coding Mus_musculus 0 1304
ENSMUST00000138885 Rab35-002 nonsense_mediated_decay Mus_musculus 0 1240
ENSMUST00000176533 Rab26-004 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000177441 Rab26-003 retained_intron Mus_musculus 0.0000000001 73
ENSMUST00000035797 Rab26-001 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000061764 Rab26-002 protein_coding Mus_musculus 0.0000000001 73

Loading