C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543824 PHC1-001 ENSG00000111752 9606 + 12:8914553-8940404 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000543824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000543824 4.321±0.00 7.879±0.00 1.594±0.00 3.973±0.00 4.523±0.00 5.732±0.00 3.345±0.00 4.559±0.00 4.544±2.18 2.792±1.92 10.226±0.80 4.226±0.10 11.056±4.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0001 VISTA 12:8543390-9149656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001739 IEA sex chromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016574 IDA histone ubiquitination
GO:0016604 IEA nuclear body
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161739 Phc1-004 protein_coding Mus_musculus 0 3746
ENSMUST00000160696 Phc1-005 protein_coding Mus_musculus 0 3720
ENSMUST00000160163 Phc1-002 nonsense_mediated_decay Mus_musculus 0 3709
ENSMUST00000079560 Phc1-201 protein_coding Mus_musculus 0 3707
ENSMUST00000159252 Phc1-006 protein_coding Mus_musculus 0 3267
ENSMUST00000112600 Phc1-203 protein_coding Mus_musculus 0 2874
ENSMUST00000081849 Phc1-202 protein_coding Mus_musculus 0 2874
ENSMUST00000161054 Phc1-001 protein_coding Mus_musculus 0 2874
ENSMUST00000161877 Phc1-003 nonsense_mediated_decay Mus_musculus 0 2494
ENSMUST00000160843 Phc1-007 protein_coding Mus_musculus 0 839
ENSMUST00000161290 Phc1-009 nonsense_mediated_decay Mus_musculus 0 521
ENSMUST00000159384 Phc1-010 protein_coding Mus_musculus 0 468
ENSMUST00000161149 Phc1-011 protein_coding Mus_musculus 0 346
ENSMUST00000159657 Phc1-012 protein_coding Mus_musculus 0 344
ENSMUST00000161210 Phc1-008 protein_coding Mus_musculus 0 337
ENSDART00000128810 phc1-201 protein_coding Danio_rerio 1e-28 134
ENSDART00000129536 phc1-202 protein_coding Danio_rerio 1e-28 134
ENSDART00000058496 phc1-001 protein_coding Danio_rerio 1e-28 134

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