C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubby like protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112041 TULP1 9606 - 6:35497874-35512938 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229771 TULP1-003 35497874-35512938 protein_coding
  ENST00000322263 TULP1-004 35497874-35512876 protein_coding
  ENST00000373892 TULP1-002 35503751-35511967 retained_intron
  ENST00000428978 TULP1-001 35509724-35512866 protein_coding
  ENST00000448446 TULP1-005 35510706-35512274 retained_intron
  ENST00000495781 TULP1-007 35500070-35504136 retained_intron
  ENST00000496434 TULP1-006 35503386-35506018 retained_intron
  ENST00000614066 TULP1-201 35497877-35512869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonMuscleOvaryPlacentaTestisENST00000229771ENST00000322263ENST00000373892ENST00000428978ENST00000495781ENST00000496434ENST00000614066
Transcript ID Adipose Adrenal Brain Breast Colon Muscle Ovary Placenta Testis
ENST00000229771 N/A N/A N/A N/A N/A N/A N/A N/A 0.169±0.00
ENST00000322263 0.040±0.00 0.019±0.00 N/A 0.017±0.00 0.092±0.00 0.082±0.00 0.083±0.00 0.066±0.05 0.154±0.00
ENST00000373892 N/A 0.039±0.00 0.096±0.00 N/A N/A N/A 0.374±0.00 N/A N/A
ENST00000428978 N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A
ENST00000495781 N/A 0.077±0.00 0.053±0.00 N/A N/A N/A 0.151±0.00 N/A 0.288±0.00
ENST00000496434 N/A N/A 0.059±0.00 N/A N/A 0.302±0.00 0.501±0.00 N/A N/A
ENST00000614066 N/A N/A N/A N/A N/A N/A 0.430±0.00 0.012±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002F1 CIL_0002F1_0001 CGP 6:35473597-35512938
CIL_0002F0 CIL_0002F0_0001 CGP 6:35497874-35728583

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 ISS photoreceptor outer segment
GO:0001895 IMP retina homeostasis
GO:0001917 ISS photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005546 IDA phosphatidylinositol-4,5-bisphosphate binding
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006909 IEA phagocytosis
GO:0007601 TAS visual perception
GO:0007602 IEA phototransduction
GO:0008020 IEA G-protein coupled photoreceptor activity
GO:0016358 ISS dendrite development
GO:0030054 IEA cell junction
GO:0042462 ISS eye photoreceptor cell development
GO:0042995 IDA cell projection
GO:0045202 ISS synapse
GO:0045494 ISS photoreceptor cell maintenance
GO:0050766 IDA positive regulation of phagocytosis
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0051015 IDA actin filament binding
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075295 tulp1a tubby like protein 1a protein_coding Danio_rerio
ENSDARG00000078210 tulp1b tubby like protein 1b protein_coding Danio_rerio
ENSMUSG00000037446 Tulp1 tubby like protein 1 protein_coding Mus_musculus

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