C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubby like protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322263 TULP1-004 ENSG00000112041 9606 - 6:35497874-35512876 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonMuscleOvaryPlacentaTestisENST00000322263
Transcript ID Adipose Adrenal Breast Colon Muscle Ovary Placenta Testis
ENST00000322263 0.040±0.00 0.019±0.00 0.017±0.00 0.092±0.00 0.082±0.00 0.083±0.00 0.066±0.05 0.154±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002F1 CIL_0002F1_0001 CGP 6:35473597-35512938
CIL_0002F0 CIL_0002F0_0001 CGP 6:35497874-35728583

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 ISS photoreceptor outer segment
GO:0001895 IMP retina homeostasis
GO:0001917 ISS photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005546 IDA phosphatidylinositol-4,5-bisphosphate binding
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006909 IEA phagocytosis
GO:0007601 TAS visual perception
GO:0016358 ISS dendrite development
GO:0030054 IEA cell junction
GO:0042462 ISS eye photoreceptor cell development
GO:0042995 IDA cell projection
GO:0045202 ISS synapse
GO:0045494 ISS photoreceptor cell maintenance
GO:0050766 IDA positive regulation of phagocytosis
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041819 Tulp1-001 protein_coding Mus_musculus 0 1105
ENSMUST00000148188 Tulp1-007 protein_coding Mus_musculus 0 767
ENSMUST00000140250 Tulp1-002 retained_intron Mus_musculus 0 730
ENSMUST00000123797 Tulp1-011 protein_coding Mus_musculus 0 723
ENSMUST00000114794 Tulp1-004 protein_coding Mus_musculus 0 676
ENSMUST00000129375 Tulp1-012 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000130877 Tulp1-005 retained_intron Mus_musculus 0 431
ENSMUST00000142143 Tulp1-003 retained_intron Mus_musculus 0 296
ENSDART00000100948 tulp1a-201 protein_coding Danio_rerio 7e-27 126
ENSDART00000154695 tulp1a-203 protein_coding Danio_rerio 7e-27 126
ENSDART00000110522 tulp1a-001 protein_coding Danio_rerio 7e-27 126
ENSDART00000123480 tulp1a-202 protein_coding Danio_rerio 4e-24 117

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