C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubby like protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037446 Tulp1 10090 - 17:28351515-28365182 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041819 Tulp1-001 28351515-28365148 protein_coding
  ENSMUST00000114794 Tulp1-004 28355817-28365182 protein_coding
  ENSMUST00000123797 Tulp1-011 28353062-28359229 protein_coding
  ENSMUST00000125876 Tulp1-006 28361650-28362957 retained_intron
  ENSMUST00000129375 Tulp1-012 28351854-28358662 nonsense_mediated_decay
  ENSMUST00000130877 Tulp1-005 28351515-28355066 retained_intron
  ENSMUST00000131604 Tulp1-010 28358450-28362432 retained_intron
  ENSMUST00000140250 Tulp1-002 28352530-28362920 retained_intron
  ENSMUST00000142143 Tulp1-003 28352538-28356376 retained_intron
  ENSMUST00000146493 Tulp1-009 28363686-28365139 retained_intron
  ENSMUST00000148188 Tulp1-007 28351516-28358694 protein_coding
  ENSMUST00000150341 Tulp1-008 28362695-28365146 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041819ENSMUST00000114794ENSMUST00000123797ENSMUST00000125876ENSMUST00000129375ENSMUST00000130877ENSMUST00000131604ENSMUST00000140250ENSMUST00000142143ENSMUST00000148188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041819 N/A 0.059±0.00 0.039±0.00 N/A N/A N/A N/A N/A 0.019±0.01 N/A N/A 0.569±0.04 N/A N/A
ENSMUST00000114794 N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A 0.322±0.00 N/A 0.093±0.00
ENSMUST00000123797 0.499±0.09 N/A 0.069±0.03 N/A 0.099±0.00 N/A 0.057±0.00 N/A N/A N/A N/A 0.298±0.08 3.518±0.00 N/A
ENSMUST00000125876 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A 0.107±0.00
ENSMUST00000129375 N/A 0.253±0.16 0.136±0.00 N/A 0.222±0.00 0.126±0.00 0.068±0.00 0.115±0.02 0.146±0.05 N/A N/A 1.056±0.29 8.765±0.70 0.057±0.02
ENSMUST00000130877 N/A 0.055±0.00 0.034±0.00 0.061±0.00 0.053±0.01 0.041±0.00 N/A 0.018±0.00 N/A N/A N/A 0.213±0.07 N/A 0.042±0.00
ENSMUST00000131604 0.266±0.00 N/A N/A 0.425±0.00 N/A 0.227±0.07 0.082±0.00 N/A 0.123±0.00 N/A 0.175±0.00 1.125±0.18 N/A N/A
ENSMUST00000140250 0.028±0.00 N/A 0.032±0.00 N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.154±0.11 N/A 0.064±0.00
ENSMUST00000142143 N/A 0.042±0.00 N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A N/A 0.239±0.05 N/A N/A
ENSMUST00000148188 0.490±0.12 0.121±0.04 0.164±0.01 0.331±0.05 0.367±0.14 0.200±0.09 0.072±0.02 0.032±0.01 0.082±0.03 1.927±0.44 0.085±0.00 0.877±0.37 17.411±14.91 0.064±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002F1 CIL_0002F1_0002 CGP 17:28331671-28365182
CIL_0002F0 CIL_0002F0_0002 CGP 17:28351515-28517524

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0001895 IEA retina homeostasis
GO:0001917 IDA photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0005886 ISS plasma membrane
GO:0006909 IEA phagocytosis
GO:0007602 IMP phototransduction
GO:0008020 IMP G-protein coupled photoreceptor activity
GO:0009584 IMP detection of visible light
GO:0016358 IMP dendrite development
GO:0030054 IEA cell junction
GO:0042462 IMP eye photoreceptor cell development
GO:0042995 ISS cell projection
GO:0045202 IDA synapse
GO:0045494 IMP photoreceptor cell maintenance
GO:0050766 ISS positive regulation of phagocytosis
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0051015 ISS actin filament binding
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075295 tulp1a tubby like protein 1a protein_coding Danio_rerio
ENSDARG00000078210 tulp1b tubby like protein 1b protein_coding Danio_rerio
ENSG00000112041 TULP1 tubby like protein 1 protein_coding Homo_sapiens

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