C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112306 RPS12 9606 + 6:132814441-132817564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000230050 RPS12-001 132814441-132817564 protein_coding
  ENST00000484616 RPS12-002 132814569-132817564 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230050ENST00000484616
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230050 626.524±0.00 787.755±0.00 22.782±0.00 193.937±114.10 319.259±200.06 464.254±322.83 134.969±95.19 273.486±159.67 266.522±118.76 618.116±510.14 274.645±192.54 2269.877±1464.02 1358.970±133.12 639.977±67.23
ENST00000484616 N/A N/A 8.005±0.00 N/A N/A N/A N/A N/A 15.107±0.00 N/A 11.953±0.00 43.421±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014O CIL_00014O_0002 CGP 6:132814441-133532120

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0006412 IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036875 rps12 ribosomal protein S12 protein_coding Danio_rerio
ENSMUSG00000061983 Rps12 ribosomal protein S12 protein_coding Mus_musculus

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