C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000194155 PCDHB2-001 ENSG00000112852 9606 + 5:141094578-141098703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000194155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000194155 1.052±0.00 0.549±0.00 0.067±0.00 0.451±0.05 0.509±0.00 0.424±0.37 0.258±0.21 0.365±0.00 0.075±0.06 0.415±0.12 0.124±0.01 0.444±0.04 0.198±0.03 1.139±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000C CGP 5:141051135-141098703
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 1910
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 992
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 955
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 941
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 941
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 896
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 872
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 830

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