C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113163 COL4A3BP 9606 - 5:75368486-75512138 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261415 COL4A3BP-003 75374158-75511629 protein_coding
  ENST00000357457 COL4A3BP-007 75368486-75400221 protein_coding
  ENST00000380494 COL4A3BP-001 75371103-75512138 protein_coding
  ENST00000405807 COL4A3BP-002 75373655-75511629 protein_coding
  ENST00000508692 COL4A3BP-006 75373963-75385923 processed_transcript
  ENST00000508809 COL4A3BP-005 75379032-75382069 protein_coding
  ENST00000604926 COL4A3BP-008 75368487-75371841 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261415ENST00000380494ENST00000405807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261415 N/A N/A N/A 3.126±0.00 N/A N/A N/A N/A N/A 6.216±0.00 N/A 4.666±0.00 9.449±0.00 21.870±0.00
ENST00000380494 11.453±0.00 4.562±0.00 1.604±0.00 7.602±4.15 9.481±5.29 7.120±3.91 3.180±1.82 5.619±3.02 3.296±0.10 4.872±0.44 6.806±6.08 4.239±1.90 3.249±0.51 12.401±3.59
ENST00000405807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.522±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0001701 IEA in utero embryonic development
GO:0003007 IEA heart morphogenesis
GO:0004672 TAS protein kinase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006468 TAS protein phosphorylation
GO:0006665 TAS sphingolipid metabolic process
GO:0006672 IEA ceramide metabolic process
GO:0006936 IEA muscle contraction
GO:0006955 NAS immune response
GO:0007029 IEA endoplasmic reticulum organization
GO:0007165 IEA signal transduction
GO:0008283 IEA cell proliferation
GO:0008289 IEA lipid binding
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030148 TAS sphingolipid biosynthetic process
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0035620 IDA ceramide transporter activity
GO:0035621 IGI ER to Golgi ceramide transport
GO:0044281 TAS small molecule metabolic process
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055088 IEA lipid homeostasis
GO:0070273 IDA phosphatidylinositol-4-phosphate binding
GO:0070584 IEA mitochondrion morphogenesis
GO:0097001 IDA ceramide binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024325 col4a3bpa collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a protein_coding Danio_rerio
ENSDARG00000063542 COL4A3BP (2 of 2) collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein_coding Danio_rerio
ENSMUSG00000021669 Col4a3bp collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein_coding Mus_musculus

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