C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380494 COL4A3BP-001 ENSG00000113163 9606 - 5:75371103-75512138 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380494
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380494 11.453±0.00 4.562±0.00 1.604±0.00 7.602±4.15 9.481±5.29 7.120±3.91 3.180±1.82 5.619±3.02 3.296±0.10 4.872±0.44 6.806±6.08 4.239±1.90 3.249±0.51 12.401±3.59

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0001701 IEA in utero embryonic development
GO:0003007 IEA heart morphogenesis
GO:0004672 TAS protein kinase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006468 TAS protein phosphorylation
GO:0006665 TAS sphingolipid metabolic process
GO:0006672 IEA ceramide metabolic process
GO:0006936 IEA muscle contraction
GO:0006955 NAS immune response
GO:0007029 IEA endoplasmic reticulum organization
GO:0007165 IEA signal transduction
GO:0008283 IEA cell proliferation
GO:0008289 IEA lipid binding
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0030148 TAS sphingolipid biosynthetic process
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0035620 IDA ceramide transporter activity
GO:0035621 IGI ER to Golgi ceramide transport
GO:0044281 TAS small molecule metabolic process
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055088 IEA lipid homeostasis
GO:0070273 IDA phosphatidylinositol-4-phosphate binding
GO:0070584 IEA mitochondrion morphogenesis
GO:0097001 IDA ceramide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077672 Col4a3bp-201 protein_coding Mus_musculus 0 4580
ENSMUST00000109444 Col4a3bp-202 protein_coding Mus_musculus 0 2730
ENSMUST00000179226 Col4a3bp-203 protein_coding Mus_musculus 0 1783
ENSDART00000035299 col4a3bpa-201 protein_coding Danio_rerio 0 584
ENSDART00000149787 col4a3bpa-001 protein_coding Danio_rerio 0 584
ENSDART00000092938 col4a3bpa-002 protein_coding Danio_rerio 0 318

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