C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021669 Col4a3bp 10090 + 13:96542618-96640167 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077672 Col4a3bp-201 96542735-96640167 protein_coding
  ENSMUST00000109444 Col4a3bp-202 96542735-96640167 protein_coding
  ENSMUST00000179226 Col4a3bp-203 96542618-96638015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077672ENSMUST00000109444ENSMUST00000179226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077672 4.581±1.71 5.554±0.00 6.028±0.52 3.489±0.70 3.938±0.99 3.323±1.91 4.097±0.14 2.064±0.63 1.951±0.74 4.034±1.11 8.578±0.84 2.263±0.84 3.250±1.59 4.938±2.64
ENSMUST00000109444 2.194±1.12 13.445±4.07 12.805±2.25 1.746±0.40 6.170±3.00 6.061±1.04 0.688±0.00 5.643±1.18 3.118±0.69 5.811±1.69 1.315±0.24 7.339±2.35 3.147±1.92 N/A
ENSMUST00000179226 N/A 46.211±32.53 N/A 2.860±0.00 4.113±0.23 N/A 0.991±0.00 2.418±0.00 N/A N/A N/A 4.233±1.80 2.237±0.67 16.716±9.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XB CIL_0002XB_0003 CGP 13:96542618-96670936

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005829 IDA cytosol
GO:0006672 IMP ceramide metabolic process
GO:0006936 IMP muscle contraction
GO:0007029 IMP endoplasmic reticulum organization
GO:0007165 IMP signal transduction
GO:0008283 IMP cell proliferation
GO:0016301 IDA kinase activity
GO:0016310 IDA phosphorylation
GO:0034976 IMP response to endoplasmic reticulum stress
GO:0035620 ISS ceramide transporter activity
GO:0035621 ISS ER to Golgi ceramide transport
GO:0048471 IEA perinuclear region of cytoplasm
GO:0055088 IMP lipid homeostasis
GO:0070273 IEA phosphatidylinositol-4-phosphate binding
GO:0070584 IMP mitochondrion morphogenesis
GO:0097001 ISS ceramide binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024325 col4a3bpa collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a protein_coding Danio_rerio
ENSDARG00000063542 COL4A3BP (2 of 2) collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein_coding Danio_rerio
ENSG00000113163 COL4A3BP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein_coding Homo_sapiens

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