C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clathrin interactor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113282 CLINT1 9606 - 5:157785743-157859175 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000411809 CLINT1-001 157786289-157859175 protein_coding
  ENST00000518855 CLINT1-004 157786291-157796145 retained_intron
  ENST00000521047 CLINT1-007 157787602-157791841 nonsense_mediated_decay
  ENST00000521615 CLINT1-006 157791758-157805956 protein_coding
  ENST00000522381 CLINT1-008 157787471-157791724 protein_coding
  ENST00000523094 CLINT1-003 157785743-157859145 protein_coding
  ENST00000523908 CLINT1-002 157787405-157859143 protein_coding
  ENST00000524306 CLINT1-005 157786287-157790561 retained_intron
  ENST00000530302 CLINT1-009 157791620-157806012 retained_intron
  ENST00000530742 CLINT1-010 157786287-157859133 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411809ENST00000518855ENST00000522381ENST00000523908ENST00000524306ENST00000530742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411809 N/A 5.023±0.00 4.987±0.00 1.372±0.00 2.713±0.28 12.896±0.00 1.577±0.06 8.345±1.31 6.584±2.05 4.254±0.98 2.486±1.30 4.347±2.09 7.655±2.43 N/A
ENST00000518855 N/A N/A 2.949±0.00 N/A 1.877±0.00 N/A N/A N/A N/A N/A 0.965±0.00 N/A N/A N/A
ENST00000522381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.358±0.00 N/A N/A
ENST00000523908 7.287±0.00 4.265±0.00 N/A 3.685±1.65 4.943±3.26 N/A 4.861±0.00 7.389±0.00 7.463±0.00 5.499±0.00 2.978±0.00 8.816±3.80 14.663±0.00 9.662±0.00
ENST00000524306 N/A 2.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.398±0.00 N/A 3.251±0.00
ENST00000530742 N/A N/A N/A 2.246±0.00 3.318±0.00 9.624±0.00 1.103±0.00 N/A 2.281±0.00 2.847±0.00 N/A 3.218±0.00 N/A 5.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N2 CIL_0007N2_0001 UCNEbase 5:157771686-159082579
CIL_00016F CIL_00016F_0002 CGP 5:157785743-159099761

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0006897 IEA endocytosis
GO:0008289 IEA lipid binding
GO:0016020 IDA membrane
GO:0030136 IEA clathrin-coated vesicle
GO:0030276 IPI clathrin binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048268 IEA clathrin coat assembly
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025535 clint1a clathrin interactor 1a protein_coding Danio_rerio
ENSDARG00000089914 CLINT1 (2 of 2) clathrin interactor 1 protein_coding Danio_rerio
ENSMUSG00000006169 Clint1 clathrin interactor 1 protein_coding Mus_musculus

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