C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clathrin interactor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000523908 CLINT1-002 ENSG00000113282 9606 - 5:157787405-157859143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000523908
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000523908 7.287±0.00 4.265±0.00 3.685±1.65 4.943±3.26 4.861±0.00 7.389±0.00 7.463±0.00 5.499±0.00 2.978±0.00 8.816±3.80 14.663±0.00 9.662±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N2 CIL_0007N2_0001 UCNEbase 5:157771686-159082579
CIL_00016F CIL_00016F_0002 CGP 5:157785743-159099761

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0006897 IEA endocytosis
GO:0008289 IEA lipid binding
GO:0016020 IDA membrane
GO:0030136 IEA clathrin-coated vesicle
GO:0030276 IPI clathrin binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048268 IEA clathrin coat assembly
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109261 Clint1-001 protein_coding Mus_musculus 0 2628
ENSMUST00000109260 Clint1-002 protein_coding Mus_musculus 0 1832
ENSMUST00000133715 Clint1-003 processed_transcript Mus_musculus 0 1256

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