C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007N2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
EBF1 UCNEbase 9606 5:157771686-159082579
GeneTranscriptPositionBiotype
ENSG00000113282 (CLINT1)
clathrin interactor 1 		ENST00000411809 (CLINT1-001) 157786289-157859175 protein_coding
ENST00000518855 (CLINT1-004) 157786291-157796145 retained_intron
ENST00000521047 (CLINT1-007) 157787602-157791841 nonsense_mediated_decay
ENST00000521615 (CLINT1-006) 157791758-157805956 protein_coding
ENST00000522381 (CLINT1-008) 157787471-157791724 protein_coding
ENST00000523094 (CLINT1-003) 157785743-157859145 protein_coding
ENST00000523908 (CLINT1-002) 157787405-157859143 protein_coding
ENST00000524306 (CLINT1-005) 157786287-157790561 retained_intron
ENST00000530302 (CLINT1-009) 157791620-157806012 retained_intron
ENST00000530742 (CLINT1-010) 157786287-157859133 protein_coding
ENSG00000164330 (EBF1)
early B-cell factor 1 		ENST00000313708 (EBF1-001) 158695920-159099761 protein_coding
ENST00000380654 (EBF1-002) 158698664-159099693 protein_coding
ENST00000517373 (EBF1-006) 158698689-159099761 protein_coding
ENST00000518323 (EBF1-007) 158698641-158708009 processed_transcript
ENST00000518836 (EBF1-010) 158695920-159099757 processed_transcript
ENST00000519739 (EBF1-009) 158695920-159096370 retained_intron
ENST00000519890 (EBF1-005) 158695920-159073794 retained_intron
ENST00000522192 (EBF1-003) 158698885-159096606 retained_intron
ENST00000523315 (EBF1-004) 159084666-159097623 processed_transcript
ENST00000523464 (EBF1-008) 158731044-159019129 processed_transcript
ENST00000622875 (EBF1-201) 158695916-158840123 protein_coding
ENSG00000213414 (CTB-47B8.5)
 ENST00000519230 (CTB-47B8.5-001) 157986146-157987706 processed_pseudogene
ENSG00000244331 (CTB-47B8.1)
 ENST00000460082 (CTB-47B8.1-001) 157931258-157931563 processed_pseudogene
ENSG00000253424 (CTC-436K13.3)
 ENST00000518103 (CTC-436K13.3-001) 158256137-158258436 lincRNA
ENSG00000253449 (CTC-436K13.6)
 ENST00000523178 (CTC-436K13.6-001) 158225352-158234376 lincRNA
ENSG00000253456 (CTD-2363C16.2)
 ENST00000518425 (CTD-2363C16.2-001) 158985806-158987199 antisense
ENSG00000253673 (CTC-436K13.1)
 ENST00000522975 (CTC-436K13.1-001) 158175396-158200016 lincRNA
ENSG00000253743 (MARK2P11)
MAP/microtubule affinity-regulating kinase 2 pseudogene 11 		ENST00000518523 (MARK2P11-001) 157984658-157989990 unprocessed_pseudogene
ENSG00000253792 (CTC-436K13.5)
 ENST00000522769 (CTC-436K13.5-001) 158173601-158176422 lincRNA
ENSG00000253811 (CTD-2363C16.1)
 ENST00000522582 (CTD-2363C16.1-001) 158983006-158984789 antisense
ENSG00000254047 (CTC-436K13.4)
 ENST00000518624 (CTC-436K13.4-001) 158188977-158189911 processed_pseudogene
ENSG00000254135 (RP11-32D16.1)
 ENST00000519609 (RP11-32D16.1-001) 158485300-158534438 lincRNA
ENST00000522704 (RP11-32D16.1-002) 158485190-158503392 lincRNA
ENSG00000254350 (RP11-542A14.1)
 ENST00000517595 (RP11-542A14.1-001) 158424585-158452758 lincRNA
ENSG00000272085 (RP11-542A14.2)
 ENST00000607514 (RP11-542A14.2-001) 158464465-158464678 lincRNA
ENSG00000276778 (RP11-524N5.1)
 ENST00000619068 (RP11-524N5.1-001) 158320683-158409773 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007N2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
EBF1 UCNEbase 10090 11:44634884-45922375
GeneTranscriptPositionBiotype
ENSMUSG00000006169 (Clint1)
clathrin interactor 1 		ENSMUST00000109260 (Clint1-002) 45852051-45910625 protein_coding
ENSMUST00000109261 (Clint1-001) 45852051-45910625 protein_coding
ENSMUST00000133715 (Clint1-003) 45882397-45910625 processed_transcript
ENSMUSG00000057098 (Ebf1)
early B cell factor 1 		ENSMUST00000081265 (Ebf1-001) 44617317-45008091 protein_coding
ENSMUST00000101326 (Ebf1-002) 44617317-45005529 protein_coding
ENSMUST00000109268 (Ebf1-003) 44617317-45004995 protein_coding
ENSMUST00000135993 (Ebf1-006) 44618179-44643469 processed_transcript
ENSMUST00000138452 (Ebf1-007) 44621761-44643459 processed_transcript
ENSMUST00000140822 (Ebf1-004) 44912138-44972914 processed_transcript
ENSMUST00000149997 (Ebf1-005) 44618116-44646820 processed_transcript
ENSMUSG00000076031 (Gm22751)
predicted gene, 22751 		ENSMUST00000102077 (Gm22751-201) 45829779-45829887 miRNA
ENSMUSG00000077320 (Gm22284)
predicted gene, 22284 		ENSMUST00000104132 (Gm22284-201) 45639383-45639514 snoRNA
ENSMUSG00000080981 (Gm12161)
predicted gene 12161 		ENSMUST00000121454 (Gm12161-001) 45280594-45280954 processed_pseudogene
ENSMUSG00000081251 (Gm12164)
predicted gene 12164 		ENSMUST00000121695 (Gm12164-001) 45829319-45829869 processed_pseudogene
ENSMUSG00000083017 (Gm12163)
predicted gene 12163 		ENSMUST00000121597 (Gm12163-001) 45813604-45813992 processed_pseudogene
ENSMUSG00000084773 (Gm12159)
predicted gene 12159 		ENSMUST00000143869 (Gm12159-001) 45102866-45116928 lincRNA
ENSMUSG00000085784 (Gm12158)
predicted gene 12158 		ENSMUST00000130493 (Gm12158-001) 44659522-44662676 antisense
ENSMUSG00000086686 (F630206G17Rik)
RIKEN cDNA F630206G17 gene 		ENSMUST00000137002 (F630206G17Rik-001) 45808087-45841171 processed_transcript
ENSMUSG00000087089 (Gm12160)
predicted gene 12160 		ENSMUST00000146372 (Gm12160-001) 45160943-45213656 lincRNA

Mus musculus Ensembl (GRCm38)

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CIL_0007N2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
EBF1 UCNEbase 7955 14:36210902-36464717
GeneTranscriptPositionBiotype
ENSDARG00000016116 (ebf1a)
early B-cell factor 1a 		ENSDART00000006698 (ebf1a-201) 36182879-36409370 protein_coding
ENSDART00000134114 (ebf1a-001) 36323322-36391249 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007N2_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
EBF1 UCNEbase 7955 21:32823306-32942019
GeneTranscriptPositionBiotype
ENSDARG00000092635 (EBF1 (3 of 3))
 ENSDART00000140184 (EBF1 (3 of 3)-001) 32938912-32961030 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007N2_0001ENSG00000113282ENST00000411809ENST00000518855ENST00000521047ENST00000521615ENST00000522381ENST00000523094ENST00000523908ENST00000524306ENST00000530302ENST00000530742ENSG00000164330ENST00000313708ENST00000380654ENST00000517373ENST00000518323ENST00000518836ENST00000519739ENST00000519890ENST00000522192ENST00000523315ENST00000523464ENST00000622875ENSG00000213414ENST00000519230ENSG00000244331ENST00000460082ENSG00000253424ENST00000518103ENSG00000253449ENST00000523178ENSG00000253456ENST00000518425ENSG00000253673ENST00000522975ENSG00000253743ENST00000518523ENSG00000253792ENST00000522769ENSG00000253811ENST00000522582ENSG00000254047ENST00000518624ENSG00000254135ENST00000519609ENST00000522704ENSG00000254350ENST00000517595ENSG00000272085ENST00000607514ENSG00000276778ENST00000619068CIL_0007N2_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_0007N2_0003ENSDARG00000016116ENSDART00000006698ENSDART00000134114CIL_0007N2_0004ENSDARG00000092635ENSDART00000140184
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007N2_0001ENSG00000113282ENST00000411809ENST00000518855ENST00000522381ENST00000523908ENST00000524306ENST00000530742ENSG00000164330ENST00000313708ENST00000380654ENST00000517373ENST00000518836ENST00000519739ENST00000523315ENST00000622875ENSG00000213414ENST00000519230ENSG00000244331ENST00000460082ENSG00000253424ENST00000518103ENSG00000253449ENST00000523178ENSG00000253456ENST00000518425ENSG00000253673ENST00000522975ENSG00000253743ENST00000518523ENSG00000253792ENST00000522769ENSG00000253811ENST00000522582ENSG00000254047ENST00000518624ENSG00000254135ENST00000519609ENST00000522704ENSG00000254350ENST00000517595ENSG00000272085ENST00000607514ENSG00000276778ENST00000619068CIL_0007N2_0002ENSMUSG00000006169ENSMUST00000109260ENSMUST00000109261ENSMUST00000133715ENSMUSG00000057098ENSMUST00000081265ENSMUST00000101326ENSMUST00000109268ENSMUST00000138452ENSMUST00000149997ENSMUSG00000076031ENSMUST00000102077ENSMUSG00000077320ENSMUST00000104132ENSMUSG00000080981ENSMUST00000121454ENSMUSG00000081251ENSMUST00000121695ENSMUSG00000083017ENSMUST00000121597ENSMUSG00000084773ENSMUST00000143869ENSMUSG00000085784ENSMUST00000130493ENSMUSG00000086686ENSMUST00000137002ENSMUSG00000087089ENSMUST00000146372CIL_0007N2_0003ENSDARG00000016116ENSDART00000006698CIL_0007N2_0004ENSDARG00000092635ENSDART00000140184
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113282 ENST00000411809 N/A 5.023±0.00 4.987±0.00 1.372±0.00 2.713±0.28 12.896±0.00 1.577±0.06 8.345±1.31 6.584±2.05 4.254±0.98 2.486±1.30 4.347±2.09 7.655±2.43 N/A
ENST00000518855 N/A N/A 2.949±0.00 N/A 1.877±0.00 N/A N/A N/A N/A N/A 0.965±0.00 N/A N/A N/A
ENST00000521047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.358±0.00 N/A N/A
ENST00000523094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523908 7.287±0.00 4.265±0.00 N/A 3.685±1.65 4.943±3.26 N/A 4.861±0.00 7.389±0.00 7.463±0.00 5.499±0.00 2.978±0.00 8.816±3.80 14.663±0.00 9.662±0.00
ENST00000524306 N/A 2.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.398±0.00 N/A 3.251±0.00
ENST00000530302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530742 N/A N/A N/A 2.246±0.00 3.318±0.00 9.624±0.00 1.103±0.00 N/A 2.281±0.00 2.847±0.00 N/A 3.218±0.00 N/A 5.876±0.00
ENSG00000164330 ENST00000313708 8.491±0.00 2.671±0.00 0.688±0.00 0.313±0.00 6.538±5.32 1.428±0.39 0.995±0.12 0.904±0.00 4.180±0.00 1.312±0.00 0.284±0.00 1.432±0.62 0.983±0.75 2.978±0.00
ENST00000380654 N/A N/A N/A 0.422±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.224±0.00 1.132±0.00
ENST00000517373 N/A N/A 2.872±0.00 N/A 4.170±0.00 3.898±0.00 2.663±0.00 0.618±0.00 5.331±0.00 3.658±0.00 1.370±0.00 4.513±0.00 N/A N/A
ENST00000518323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518836 N/A 1.811±0.00 N/A 0.183±0.00 7.924±6.48 1.209±0.00 0.743±0.00 N/A N/A 1.160±0.00 0.598±0.00 0.784±0.60 1.638±0.00 4.925±0.00
ENST00000519739 N/A N/A N/A 0.423±0.00 N/A N/A N/A N/A N/A 0.678±0.00 N/A N/A N/A N/A
ENST00000519890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523315 N/A N/A 28.567±0.00 1.490±0.00 22.522±0.00 26.152±0.00 5.740±0.00 1.386±0.00 47.761±0.00 18.903±0.00 21.766±0.00 13.329±0.00 N/A N/A
ENST00000523464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622875 N/A 2.559±0.00 N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A 0.717±0.00 N/A N/A 1.811±0.00
ENSG00000213414 ENST00000519230 N/A N/A N/A N/A N/A 0.076±0.04 N/A N/A N/A N/A 0.014±0.00 N/A N/A 0.015±0.00
ENSG00000244331 ENST00000460082 0.718±0.00 1.371±0.00 N/A 0.085±0.00 0.730±0.00 0.373±0.00 0.214±0.00 0.239±0.00 0.070±0.00 0.910±0.00 0.865±0.00 N/A N/A 0.193±0.09
ENSG00000253424 ENST00000518103 N/A N/A N/A 0.090±0.00 0.195±0.00 0.086±0.00 0.577±0.00 N/A 1.197±0.00 0.219±0.00 N/A 0.276±0.09 0.060±0.01 0.334±0.25
ENSG00000253449 ENST00000523178 0.081±0.00 0.311±0.00 N/A 0.153±0.00 0.211±0.00 0.121±0.00 0.029±0.00 0.176±0.00 0.068±0.00 0.181±0.00 N/A 0.038±0.00 N/A 0.088±0.00
ENSG00000253456 ENST00000518425 0.069±0.00 0.168±0.00 N/A N/A 0.168±0.00 2.077±0.00 0.044±0.00 0.094±0.00 N/A N/A 2.134±0.00 0.915±0.88 N/A 0.055±0.00
ENSG00000253673 ENST00000522975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A
ENSG00000253743 ENST00000518523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00
ENSG00000253792 ENST00000522769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00
ENSG00000253811 ENST00000522582 0.021±0.00 0.083±0.00 N/A 0.103±0.00 0.246±0.00 N/A 0.113±0.00 N/A N/A 1.533±0.00 0.048±0.03 0.058±0.00 0.029±0.00 0.093±0.00
ENSG00000254047 ENST00000518624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A
ENSG00000254135 ENST00000519609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.130±0.00
ENST00000522704 0.271±0.00 N/A N/A N/A 0.329±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.419±0.14
ENSG00000254350 ENST00000517595 0.067±0.00 N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
ENSG00000272085 ENST00000607514 0.075±0.00 N/A N/A N/A 0.315±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276778 ENST00000619068 0.021±0.00 N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.037±0.03 N/A 0.034±0.00 N/A 0.005±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006169 ENSMUST00000109260 22.977±5.79 22.760±7.16 26.261±2.06 14.512±2.09 20.681±2.31 50.165±3.40 9.245±3.53 27.782±2.18 24.443±10.79 23.076±3.41 8.047±0.76 34.944±8.34 43.763±11.48 16.113±5.32
ENSMUST00000109261 8.049±3.16 8.655±2.11 10.097±0.00 8.330±0.42 8.282±0.68 16.463±2.02 7.588±1.15 8.275±3.21 7.666±2.26 9.109±1.22 2.974±0.96 14.920±2.24 11.452±1.47 9.054±1.76
ENSMUST00000133715 N/A N/A N/A 1.341±0.02 1.912±0.08 N/A N/A N/A 2.644±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000057098 ENSMUST00000081265 9.710±2.96 2.109±0.80 0.953±0.08 3.183±2.77 7.751±1.46 0.722±0.15 1.652±0.60 1.497±0.34 0.332±0.46 2.335±0.30 0.683±0.19 1.507±0.63 0.279±0.21 0.174±0.11
ENSMUST00000101326 16.550±4.91 8.106±0.82 N/A 5.137±0.45 21.239±6.47 1.390±0.56 2.470±0.77 3.046±1.17 0.242±0.24 4.999±1.54 0.386±0.00 5.193±2.25 0.141±0.08 0.459±0.09
ENSMUST00000109268 14.154±7.60 2.595±1.16 1.291±0.07 3.371±0.00 12.875±4.38 1.491±0.73 2.465±0.55 2.340±0.94 0.090±0.03 1.343±0.11 0.384±0.05 3.173±1.90 N/A 0.188±0.00
ENSMUST00000135993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138452 N/A N/A N/A 8.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149997 N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.17 N/A N/A N/A N/A N/A
ENSMUSG00000076031 ENSMUST00000102077 N/A N/A N/A N/A 2056.150±0.00 N/A N/A N/A 1384.720±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000077320 ENSMUST00000104132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.370±0.00 N/A N/A
ENSMUSG00000080981 ENSMUST00000121454 0.701±0.37 0.659±0.26 0.300±0.24 0.467±0.14 0.751±0.62 1.087±0.51 0.495±0.14 0.744±0.43 0.501±0.30 0.357±0.10 0.123±0.00 2.576±1.50 0.195±0.17 0.277±0.13
ENSMUSG00000081251 ENSMUST00000121695 0.125±0.04 0.131±0.01 0.076±0.05 0.024±0.01 0.203±0.09 0.138±0.00 N/A 0.108±0.04 0.106±0.07 N/A N/A N/A 0.137±0.07 0.123±0.04
ENSMUSG00000083017 ENSMUST00000121597 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.097±0.00 0.214±0.00 N/A N/A
ENSMUSG00000084773 ENSMUST00000143869 0.031±0.01 N/A 0.023±0.00 N/A 0.191±0.09 0.057±0.00 N/A 0.044±0.02 0.019±0.01 0.042±0.01 0.053±0.03 0.064±0.06 0.011±0.00 0.071±0.02
ENSMUSG00000085784 ENSMUST00000130493 0.556±0.05 0.414±0.15 N/A 0.624±0.52 0.687±0.27 0.237±0.00 0.277±0.05 0.216±0.07 0.054±0.00 0.322±0.07 0.074±0.00 0.316±0.37 0.118±0.07 N/A
ENSMUSG00000086686 ENSMUST00000137002 0.083±0.00 N/A 0.029±0.00 N/A 0.172±0.05 N/A 0.061±0.00 N/A N/A 0.182±0.00 0.082±0.01 0.064±0.00 0.019±0.00 N/A
ENSMUSG00000087089 ENSMUST00000146372 N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A 0.189±0.11 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016116 ENSDART00000006698 N/A N/A N/A 2.007±1.46 N/A N/A 0.595±0.49 0.339±0.27 N/A N/A 0.671±0.00 N/A N/A N/A
ENSDART00000134114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000092635 ENSDART00000140184 N/A N/A N/A 7.303±0.83 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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